PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000031.1.g00027.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 232aa    MW: 26407.8 Da    PI: 9.6636
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000031.1.g00027.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-162761999
                                    -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                    p  f+++  g +  +++ +l+d++g+sW+v+l  + + g+ ++ +GW +Fvk + L+egDf+v++++g+++f   vk++++
  FANhyb_rscf00000031.1.g00027.1  2 PTAFVDKLRGTP--PFKCVLRDPDGQSWNVTL--KERAGGLFFCTGWPKFVKHHCLDEGDFLVLYYTGKHKF--DVKIYDE 76
                                    677887776665..5689**************..99999*99999*********************998888..8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.24177IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-20182IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-15175No hitNo description
Gene3DG3DSA:2.40.330.102.3E-18279IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-14275IPR003340B3 DNA binding domain
SMARTSM010190.0013577IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-15116212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-14116212IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.107120214IPR003340B3 DNA binding domain
SMARTSM010190.0012123215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MPTAFVDKLR GTPPFKCVLR DPDGQSWNVT LKERAGGLFF CTGWPKFVKH HCLDEGDFLV  60
LYYTGKHKFD VKIYDESACE MDLEVSKRRR LTDGSSDQVM SGKAVIEETP SGLTVFKSKY  120
SCFMKTLVKC KLYEMTIPRR IVIAEGLEKG KPVKLQDPKK RSQIVNTTVT KDGRLKLTKG  180
WSQSCREFEI SIGDEIVFEF VKPNVILVHN LRGKVVILEG PKVVDSSNYK KF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18690KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459603.11e-168PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A2P6PYA91e-121A0A2P6PYA9_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_008226602.18e-58(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-14B3 family protein