PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000031.1.g00032.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 270aa    MW: 30119.2 Da    PI: 5.9111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000031.1.g00032.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.5e-105643398
                                    -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                    ++++tlede+g++++ k+    ++ +  l++GW++F   ++L +g ++vF+ +  ++++++v +++
  FANhyb_rscf00000031.1.g00032.1  5 DQDITLEDEDGEKFTTKY--LAGKMG--LSAGWRGFSLKHRLVQGYVLVFHKV--ETQKFKVYICK 64
                                    568***************..666655..9**********************44..66666999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.377166IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-11468IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-13564No hitNo description
PfamPF023623.8E-8564IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-10566IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGSSDQDITL EDEDGEKFTT KYLAGKMGLS AGWRGFSLKH RLVQGYVLVF HKVETQKFKV  60
YICKPNTTKQ VKFAADVSQT AVNDTQMAVD TQTTAFNSPT SSELSEDLLY IMGDHDDDVS  120
SYIDGFEDSS DCVLFERPGL ALSESAATPL KEVTCFDKFK VMFNGRNINS QIPKVVLKKY  180
YELCSSQSSH LHQHVVESLN SHLVVGLITE TVNITDAVKS CKITTKECDF QTWEKTLEAS  240
EILGMNVGFL RIRVRRLASL AAESLQVSKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459608.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_011459609.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2P6PYB23e-77A0A2P6PYB2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004293243.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3385522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-14B3 family protein