PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000031.1.g00036.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 384aa MW: 42442.5 Da PI: 6.7821

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000031.1.g00036.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.6	5.1e-28	198	256	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dg++WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh FANhyb_rscf00000031.1.g00036.1 198 VKDGFQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCFLVATYEGEHNH 256 58*************************99************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-26	193	259	IPR003657	WRKY domain
PROSITE profile	PS50811	25.339	193	259	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-23	194	258	IPR003657	WRKY domain
SMART	SM00774	2.6E-31	198	258	IPR003657	WRKY domain
Pfam	PF03106	9.7E-23	199	256	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDASKWVNTS LGLNLVPVDS HHAMDDQDQS PLPTITKQVE ESEGQYAVFE SNLRSPKQEA 60 GAGAGGTVLM AEELNRITLE NKKLTQMLAV LCENYNALET HVKELRTNKQ LPSENELISS 120 GNTCSLLHKK RKSPGNDHQD YCNNVNMIGF STNTISTAET SSSDEESYKR PKEMMSDINL 180 KISRVYVRCD VCDTRLIVKD GFQWRKYGQK VTRDNPSPRA YYKCSFAPSC PVKKKVQKSA 240 ENPCFLVATY EGEHNHIHPA GPQVITIDHQ GHSSNIFAPK ISSPPSSSPS TTTVSTMSMS 300 SSCVLDSSTE PGSSFGHKPN QGREAFDDQY DEKATNFQQL LVQQMASSLT KDPNFTTALA 360 AAISAGRFNI LDQLPQPHPP IPKW

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDASKWVNTS LGLNLVPVDS HHAMDDQDQS PLPTITKQVE ESEGQYAVFE SNLRSPKQEA  60
GAGAGGTVLM AEELNRITLE NKKLTQMLAV LCENYNALET HVKELRTNKQ LPSENELISS  120
GNTCSLLHKK RKSPGNDHQD YCNNVNMIGF STNTISTAET SSSDEESYKR PKEMMSDINL  180
KISRVYVRCD VCDTRLIVKD GFQWRKYGQK VTRDNPSPRA YYKCSFAPSC PVKKKVQKSA  240
ENPCFLVATY EGEHNHIHPA GPQVITIDHQ GHSSNIFAPK ISSPPSSSPS TTTVSTMSMS  300
SSCVLDSSTE PGSSFGHKPN QGREAFDDQY DEKATNFQQL LVQQMASSLT KDPNFTTALA  360
AAISAGRFNI LDQLPQPHPP IPKW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-19	197	261	13	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291954.1	0.0	PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBL	A0A2P6PY89	0.0	A0A2P6PY89_ROSCH; Putative transcription factor WRKY family
STRING	XP_004291954.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF973	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	5e-58	WRKY DNA-binding protein 40