PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000034.1.g00014.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 228aa    MW: 25944.6 Da    PI: 6.6771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000034.1.g00014.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.81.1e-32371711128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeek..ewyfFskrdkkyat.gkrkn 75 
                                     lppG+rF+P d+elv +yL +k+ g++++l++v+ke+d+y+++P +Lp+  +++++k  e y+F++ ++ y++ gk ++
  FANhyb_rscf00000034.1.g00014.1  37 LPPGYRFSPVDDELVLFYLFNKILGRNIPLTDVVKEIDLYEHDPDQLPQgDYRHGTKrcEAYYFTNVEQVYSReGKVTK 115
                                     79**********************************************5444444443588**********96488899 PP

                             NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                     r+tk gyWk t + k+v+   ++ +vg k+++ f kg   ap+g+ ++ +mheyr+
  FANhyb_rscf00000034.1.g00014.1 116 RTTKGGYWKVTSEGKKVTYGdDEIVVGFKTSMLFNKGhvPAPRGTISSFIMHEYRV 171
                                     9***************999756677**********884468999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-3432200IPR003441NAC domain
PROSITE profilePS5100537.38537200IPR003441NAC domain
PfamPF023658.3E-1738171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAFLPSRFKK KKALKGDFDL LECSKVDVGM TEQECNLPPG YRFSPVDDEL VLFYLFNKIL  60
GRNIPLTDVV KEIDLYEHDP DQLPQGDYRH GTKRCEAYYF TNVEQVYSRE GKVTKRTTKG  120
GYWKVTSEGK KVTYGDDEIV VGFKTSMLFN KGHVPAPRGT ISSFIMHEYR VNPSIVPVDV  180
LNGSIRAKIE RFVVCKIVNK EKEAGQEGPP AYKLPPELPS HEEDEESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-25312039171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297251.11e-163PREDICTED: NAC domain-containing protein 68-like
RefseqXP_011463028.11e-163PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A2P6R2K51e-123A0A2P6R2K5_ROSCH; Putative transcription factor NAM family
STRINGXP_004297251.11e-162(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15772611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-27NAC-like, activated by AP3/PI