PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000035.1.g00010.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 257aa MW: 29254.6 Da PI: 5.9791

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000035.1.g00010.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.6e-20	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ FANhyb_rscf00000035.1.g00010.1 88 RQRWTPTLVQLQILEQLFDQgNGTPSKQKIKEMTSELsqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	97.7	9e-32	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt Q++iLe+l+++G tP+k++i+++t+eL+++G+i+++NV++WFQNr+aR+++kq FANhyb_rscf00000035.1.g00010.1 87 ARQRWTPTLVQLQILEQLFDQGNGTPSKQKIKEMTSELSQHGQISETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-16	82	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.754	84	149	IPR001356	Homeobox domain
SMART	SM00389	5.8E-13	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-17	87	152	IPR009057	Homeodomain-like
CDD	cd00086	3.57E-11	88	150	No hit	No description
Pfam	PF00046	5.0E-18	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MMEWDKQHQQ KEQEIDGNGN GGVGFVKVMT DEQLETLRKQ IAVYATICEQ LVEMHKNLTA 60 QQDLAGIRMG NLYCDPRMTS SGHKITARQR WTPTLVQLQI LEQLFDQGNG TPSKQKIKEM 120 TSELSQHGQI SETNVYNWFQ NRRARSKRKQ QNATSNNAES EVETEVDSPK DKKKGPQDQI 180 LHSQQNTSAQ RAEDLCFQKP EMSSDLHFLD PQGIKEDKMF ASSSDLRSSR GGNELMTGKM 240 EVGGSYNLFQ QAEDYSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004287723.1	1e-173	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	O81788	5e-91	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A2P6RL80	1e-171	A0A2P6RL80_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004287723.1	1e-172	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-91	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]