PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000035.1.g00029.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 193aa    MW: 21941.3 Da    PI: 5.1321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000035.1.g00029.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-15127171347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                      W++eE++l++++ +++G+g+Wk+I+r+    R + q+ s+ qky
  FANhyb_rscf00000035.1.g00029.1 127 VWSEEEHKLFLQGLEKYGKGDWKSISRHCVVSRNPTQVASHAQKY 171
                                     6*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.9963489IPR017877Myb-like domain
SMARTSM007170.623891IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-64196IPR009057Homeodomain-like
CDDcd001670.003944285No hitNo description
Gene3DG3DSA:1.10.10.601.1E-11119177IPR009057Homeodomain-like
PROSITE profilePS5129419.979120176IPR017930Myb domain
SuperFamilySSF466893.8E-17121177IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-16124174IPR006447Myb domain, plants
SMARTSM007173.5E-11124174IPR001005SANT/Myb domain
PfamPF002492.7E-12127171IPR001005SANT/Myb domain
CDDcd001671.41E-10128172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDQLSYLPTA PPSPPFPSSS SSSSALFKSP PQLAEDHGDD QWTFEENKRF EDALAEFDDL  60
GAPDLLETIH ARVPGKTLWE IKKHFDDLVE DIDKIETGMI PIPNYKTTPT EVKSNPSRSQ  120
PRRRGVVWSE EEHKLFLQGL EKYGKGDWKS ISRHCVVSRN PTQVASHAQK YFRRLQNSAE  180
YEQDAYGECS TSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-14421181186RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461430.11e-124PREDICTED: transcription factor DIVARICATA-like isoform X2
TrEMBLA0A2P6RL601e-92A0A2P6RL60_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_008242158.11e-51(Prunus mume)
STRINGPOPTR_0007s08530.12e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1862266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-43Homeodomain-like transcriptional regulator