PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000041.1.g00016.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 660aa    MW: 71903.6 Da    PI: 6.9102
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000041.1.g00016.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.7e-27232285155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  FANhyb_rscf00000041.1.g00016.1 232 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQKFRL 285
                                     79*******************.********************************8 PP
2Response_reg77.93.6e-26481561109
                                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS
                    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77 
                                     v++vdD+ + +++l+++l++  y +v+ ++++++al+ l+ek+  +D++l D+ mp+mdG++ll+ i  e  +lp+i++
  FANhyb_rscf00000041.1.g00016.1  48 VMVVDDDTTCLSILEKMLRRCLY-QVTLCSQATDALNHLREKKgyFDVVLSDVHMPDMDGFKLLECIGLEM-DLPVIMM 124
                                     89*********************.***************999999**********************6654.8****** PP

                                     ESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                    Response_reg  78 tahgeeedalealkaGakdflsKpfdpeelvk 109
                                     +a g  + + + ++ Ga d+l Kp+ +eel +
  FANhyb_rscf00000041.1.g00016.1 125 SADGRTSAVMKGIRHGACDYLIKPIREEELKN 156
                                     *****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-16025624IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.2E-4145189No hitNo description
SuperFamilySSF521721.41E-3445174IPR011006CheY-like superfamily
SMARTSM004484.7E-2746158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.2247162IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2248156IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.73E-2549162No hitNo description
SuperFamilySSF466897.53E-19229289IPR009057Homeodomain-like
PROSITE profilePS512949.969229288IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-29229290IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-23232285IPR006447Myb domain, plants
PfamPF002494.4E-7234283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAALQSVVQS CMSTTTAASS FGSCKGGGGG ASSSVMAVPD QFPAGLRVMV VDDDTTCLSI  60
LEKMLRRCLY QVTLCSQATD ALNHLREKKG YFDVVLSDVH MPDMDGFKLL ECIGLEMDLP  120
VIMMSADGRT SAVMKGIRHG ACDYLIKPIR EEELKNIWQH VARKKLSENK ELELSGSLED  180
NDRHKRGNSD VEYTSSVNEG TEGRARSQKK RSSAKEDEDG DNDNDDMSTS KKPRVVWSVE  240
LHQQFVSAVN QLGLDKAVPK RILELMNVPG LSRENVASHL QKFRLYLKRL SVEQQQSANA  300
FCGPVEPNVK LVSHGNRFDI QALAASGQLP PQTLAALQAE LLGQPVGNHG QAIDQPAMLH  360
ATLQRPRRAP IDHNMTFGQP LIKRQYFPQS IISAEDASSG GQWRSNSLGT VAPNSNLGGF  420
STQNNMFVDI LQPDQRPQQN RHQQPLLSEP IRSINVQPSC LVAPLQSSAS FQAGNSPASV  480
NQSSSFNRST AVDYSLLSAQ SNNNSLMNVG RISGHLKTPG ILSGYSATTG SLSTPSCSVI  540
AESSTSPQNS TVTYSDARQF PGQLHNTSNI QDLYAPKSRE MLDQGAYRNL GFVGKETRIP  600
SRFAGDEFNL QSNLNHGSIR VENNGNPVKL EPNMGFVDNA NGAPIYQQFS SSDLTSVFNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22228291164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297431.10.0PREDICTED: uncharacterized protein LOC101293581
SwissprotA2XE311e-145ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-145ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2P6R3N40.0A0A2P6R3N4_ROSCH; Two-component response regulator
STRINGXP_004297431.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-117response regulator 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]