PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000042.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 279aa    MW: 32201.2 Da    PI: 9.5495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000042.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-171050242
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                    +i n+s r+ t+ kR++g++KK  EL +LCd++++ ii+s+
  FANhyb_rscf00000042.1.g00005.1 10 FITNDSARKATYKKRKKGLMKKVTELTTLCDIDACAIIYSP 50
                                    89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.918149IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.05E-19285No hitNo description
SuperFamilySSF554551.7E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT YKKRKKGLMK KVTELTTLCD IDACAIIYSP YDSQPEVWPS  60
PLGVHRVLAY FKTMPEMEQS KKMMNQESFL RQRINKAHEQ LKKQKKDNRE MEMARIMFQS  120
LTGNNSLQGL TLSDLTDLNW VIDQHQKELQ LRMKNIKEEV VKSKNQVQGV KNNGEGSSSS  180
MAMKNDEEGS NMQHAAMGRE DFDHMHNMEA MQLQMMQMPA QKQPLFMDLM NALPPPPQPH  240
PDHHQLMGFT REDMMIPFAE QSHSTMWPNP SPASGFNFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304926.11e-177PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-57AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2P6R7W11e-148A0A2P6R7W1_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004304926.11e-177(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-59AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]