PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000044.1.g00017.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 81aa    MW: 9285.29 Da    PI: 9.4693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000044.1.g00017.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101457344
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                    +WT+   +++ +a +++ ++   +W ++ar +g g++++++k ++
  FANhyb_rscf00000044.1.g00017.1 14 SWTPKQNKQFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKRHY 57
                                    7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.2241065IPR017884SANT domain
SMARTSM007178.4E-91163IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-131369IPR009057Homeodomain-like
PfamPF002491.9E-81457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-61467IPR009057Homeodomain-like
CDDcd001678.58E-71557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASNSLSSRS SSSSWTPKQN KQFEKALALY DKDTPDRWQK VARAVGGKSA EEVKRHYEIL  60
IEDVKHIESG RIPYPDYRNS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-33780376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287888.14e-54PREDICTED: protein RADIALIS-like 4
RefseqXP_024184837.14e-54protein RADIALIS-like 4 isoform X1
RefseqXP_024184838.14e-54protein RADIALIS-like 4 isoform X1
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P6RMC39e-53A0A2P6RMC3_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004287888.12e-53(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-33RAD-like 1