PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000047.1.g00015.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 263aa    MW: 30175.8 Da    PI: 9.8608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000047.1.g00015.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-18241445
                                    S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                    W++eEd++l++a+ +lG++ W+ Ia++++ gRt++ +k++w+
  FANhyb_rscf00000047.1.g00015.1  2 WSEEEDKILIEAHMELGNR-WAEIAKRLP-GRTENTIKNHWN 41
                                    *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.077148IPR017930Myb domain
PfamPF002491.1E-16241IPR001005SANT/Myb domain
SuperFamilySSF466892.94E-15251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-19242IPR009057Homeodomain-like
CDDcd001678.42E-13244No hitNo description
SMARTSM007178.8E-13246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MWSEEEDKIL IEAHMELGNR WAEIAKRLPG RTENTIKNHW NATKRKRYIK RKPSTKINLN  60
VKGNSTSTVN ESILLSKYIK SVEKSEERKN GKVAAMDYGE PSNPADSKVY RRRFERKKEK  120
STAVYEIPDY EVYPSKYNKS VVKSSAEARK KGKVTEEVYE QSRGLFDLPD SEVYRPQFES  180
SPNAWLASLR AAAAARKKQQ DDSSVEATMG SSSSYLSSMY SEFNGYGNDT RLSLEMNGYM  240
QEQAQSKRPD VDLVEMINNA KRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A6e-18247853MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A6e-18247853MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306352.11e-164PREDICTED: transcription factor MYB98-like
TrEMBLA0A3Q8TEF51e-163A0A3Q8TEF5_FRAAN; Transcription factor FaMYB98
STRINGXP_004306352.11e-163(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2616822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-23myb domain protein 98