PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000047.1.g00023.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 130aa MW: 14367.8 Da PI: 6.0759

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000047.1.g00023.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	14	36	22	46
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W++Ia++++ gRt++++k++w++ FANhyb_rscf00000047.1.g00023.1 14 R-WSKIAKHLP-GRTDNEIKNYWRT 36 5.*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.588	1	42	IPR017930	Myb domain
SuperFamily	SSF46689	2.73E-9	12	47	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-8	13	36	IPR001005	SANT/Myb domain
CDD	cd00167	6.19E-9	14	36	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-13	14	46	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MSISYPVHAT IYTRWSKIAK HLPGRTDNEI KNYWRTRIQK HIKQGDQSNS QGQSSDGTAD 60 QASTSQVGSS STVGLDAMET TYPLCAPTAS YPATLVQPPA HPNVLPPGDS NQENYWSMED 120 LWSMQLLNGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468270.1	6e-82	PREDICTED: myb-related protein 305-like
Swissprot	P81391	5e-28	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A0K0MAN2	5e-78	A0A0K0MAN2_FRAAN; Emission of benzenoids II protein
STRING	XP_004304632.1	5e-61	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3305	34	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	5e-22	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]