PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000052.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 171aa MW: 18474.2 Da PI: 9.9243

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000052.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.2e-05	47	85	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++++L++l+ + +K + a++L +A+ YIk Lq FANhyb_rscf00000052.1.g00005.1 47 RKEKLGDRIATLQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 85 7788999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.23	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	45	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-5	45	89	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-9	49	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MKISPFENEI TEVKRPGSLI EPKATQAAAP KKSRLESRTP CPPLKVRKEK LGDRIATLQQ 60 LVAPFGKTDT ASVLMEAIGY IKFLQNQVET LSVPYMKSSR DNKSSQAMLQ AGVVDINGSN 120 GDHERKRDLR SRGLCLVPLS CMSYVTDAAA ATAGVTGSVN WPSPNYGHGG T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291848.1	1e-123	PREDICTED: transcription factor bHLH110
Swissprot	Q9SFZ3	1e-54	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2P6PYU9	1e-109	A0A2P6PYU9_ROSCH; Putative transcription factor bHLH family
STRING	XP_004291848.1	1e-122	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]