PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000055.1.g00026.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 1166aa    MW: 131156 Da    PI: 8.2777
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000055.1.g00026.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57329.81.6e-091401855497
                          DUF573  54 lveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 
                                     l +K+ rLKkK+++ vkk   ++  e++f+++hd+ if++s++iW 
  FANhyb_rscf00000055.1.g00026.1 140 LGQKLGRLKKKYRNVVKKmmNNNRTEFRFRNPHDSAIFDISHRIWA 185
                                     568***************877788899******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-9134184IPR007592Protein of unknown function DUF573
SuperFamilySSF578509.18E-21371461No hitNo description
PROSITE profilePS5169820.886379458IPR003613U box domain
PfamPF045644.7E-12382456IPR003613U box domain
Gene3DG3DSA:3.30.40.101.9E-11383435IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM005041.0E-20383451IPR003613U box domain
Gene3DG3DSA:1.25.10.101.3E-60436747IPR011989Armadillo-like helical
SuperFamilySSF483715.49E-30466839IPR016024Armadillo-type fold
CDDcd000203.72E-9471567No hitNo description
SMARTSM001850.25490530IPR000225Armadillo
SMARTSM00185140535572IPR000225Armadillo
SMARTSM0018527617657IPR000225Armadillo
CDDcd000204.45E-7624743No hitNo description
SMARTSM0018592698743IPR000225Armadillo
SuperFamilySSF483716.33E-14765910IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.101.3E-608881113IPR011989Armadillo-like helical
SMARTSM00185150942983IPR000225Armadillo
SuperFamilySSF483716.33E-14966984IPR016024Armadillo-type fold
SMARTSM001850.001510301070IPR000225Armadillo
PfamPF005141.2E-510301068IPR000225Armadillo
SuperFamilySSF483716.33E-1410301158IPR016024Armadillo-type fold
CDDcd000205.59E-410371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1166 aa     Download sequence    Send to blast
MMNNNRTEFR FRNPHDSAIF DISHRIWAES PLYNIQEKNV VVDSHNVGSS KTSFDGKHGD  60
DEVAAIMLER SRRKRDKLGF LSNDRAELKL RAEKKTKCGS VMVGGEIGRN VHVDKLSNMS  120
CERTSSKWSR QKGNLFPAPL GQKLGRLKKK YRNVVKKMMN NNRTEFRFRN PHDSAIFDIS  180
HRIWAESPLY NIQEKNVVVD SHNVGSSKTS FDGKHGDDEG NTDVRGMIIG LAMTPIPLSL  240
SNYGGRGEDL EEIIKHIGEC LSFIPPSTFG DQHYAESSVQ SLSNEMQTAH FEAQASKTSE  300
IDKKTLSFRK QPKVEPTSTP TETDLYSISF EVSTENPWFL NTPQLIEMLK STSWISKRKH  360
EDMSGSLTTM PPVGQYLEPM YETFFCPLTN KVMEDPVTIR SGVTFERKAI IEWFEKLNGS  420
EQTILCPTTG QKLVSKAFNE NIALKTTIEQ WKERNEAARI KVACAALSLA SSDAMVLEAV  480
KEVQSICRRK PYNNTQVRGV GILPLLVQCL EYKDKDVRST VLELLLQLIE DDNESKEIIA  540
EIINIPTLIE MLSSSHQSIR HASLLFLLKL SRSQTVCEKI GSVTGAILML ITIKYGRSHD  600
AFASEKAEET LRNLELSQNN IKRMAENGLM EPLLKNLAEG CEEMKIDMAG YLGEIALGHD  660
GKTYVAQRVS PTLIKMVHNG NTLARSAAFR TLVQLSSHQP NANILVEAGI VQVMVEEMFI  720
RKIHNEPMNS TSEAAAILAN IFESGLELEE LQVNSHGHTM TSDYVVYNIV YMLNNSTPDE  780
LNNNLIRILL VLAKIPKPEA TIVSLVKETE ASYTLIELIN NPHERLSIAA IKLLSVLSPH  840
IGHLLAERLC KTRGQPENLL IEHSTETTLI TEKQAVSAKF LAKLPHQNLT LNLALLYKNI  900
VPTIIQKINQ IQGRRTRSSR FESTYFEGLV GILVRFTTTL YEPQMLFLAK NQNFTTVFTE  960
LLMKTSSDEV QRLSAIGLEN LSLESISLSK PPQIKRKKFM KLFYLPKYLS FGTSRRRRVP  1020
LCPVHRGACS SQNTFCIVDA KAVEKLLVCL ENENPEVVEA ALSAISTLLD DKVDVDKSVS  1080
MLSEVNAVQH VLNAVKEHRQ EGLRQKSFWV LEKFLNKGGD ESASYISNDR VLPAILVSAF  1140
HHGAGNTKQM AEKILRHLNK MPNLYT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176RRKRDK
29951017RKKFMKLFYLPKYLSFGTSRRRR
Functional Description ? help Back to Top
Source Description
UniProtFunctions as an E3 ubiquitin ligase. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462969.10.0PREDICTED: putative U-box domain-containing protein 42
SwissprotQ9CAA70.0PUB42_ARATH; Putative U-box domain-containing protein 42
TrEMBLA0A251R5370.0A0A251R537_PRUPE; RING-type E3 ubiquitin transferase
TrEMBLA0A251R6200.0A0A251R620_PRUPE; RING-type E3 ubiquitin transferase
STRINGXP_004297185.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.18e-08DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Mudgil Y,Shiu SH,Stone SL,Salt JN,Goring DR
    A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family.
    Plant Physiol., 2004. 134(1): p. 59-66
    [PMID:14657406]