PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000057.1.g00013.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 774aa    MW: 86256.2 Da    PI: 4.7438
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000057.1.g00013.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-1317783499
                                    SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                    ++  led++g++W+v +  +   g+  +++GW+ F+ +++L++gDf+vF ++  s f  +vk++++
  FANhyb_rscf00000057.1.g00013.1 17 RKTFLEDLTGQRWNVAI--STVNGSLAFQQGWNAFALDHDLQVGDFLVFNYVVGSHF--TVKIYDN 78
                                    46789************..77777799***********************9976888..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957179IPR003340B3 DNA binding domain
SMARTSM010190.0058179IPR003340B3 DNA binding domain
CDDcd100175.67E-14477No hitNo description
Gene3DG3DSA:2.40.330.106.0E-15581IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-15581IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-111778IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-9654743IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-7654744IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.037655756IPR003340B3 DNA binding domain
CDDcd100172.12E-6655738No hitNo description
SMARTSM010190.81657753IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MQELPPKVAR IVLLSDRKTF LEDLTGQRWN VAISTVNGSL AFQQGWNAFA LDHDLQVGDF  60
LVFNYVVGSH FTVKIYDNSG CELNLFETIH QHNINRDQCH TFVKSTASKS GLVTFAGPDA  120
EISKCLNELN GMNKPLIITE YASTHDDDNE RSKGKRKAEF AEDMSCMMKR DYGNQPEENR  180
AHILDLSSVE SFKKIRTCGS DGTKVSVVNE THSYRADLSL KLRSEADSVK IPVAKEVPNR  240
VIPLDAAELE RTEKNNYSES KVKGASLSDK DSSTNVTSGH LFPTLPDNTQ QNDIFSGTLI  300
IAAQKCHSAN ASGKRKYPMC NDHQVAVSGQ ENDLMDDTCQ SANKKITISG ISKSCGIPIT  360
SASQNDTAME VIEIEPLELT SHPCSKEVIP ESNDDAMMIT EKVFKEFSSD PCSQEVIPER  420
KDEATRAIEN VIVDLTSDEC SKQVIEKEES PDVSAKVDNQ SSNSQRRDIP SDQAEFERTE  480
EHNKSEAKVN KVPSDKDSCT ETSGHPFPTH SQTPEENGET ITDTSKPTSD ISKKPTKECQ  540
NADGSGKLHN DQVALVQMEP NLMDDSVPRD NKELTGISES IHDPITFESQ NLYDMIINEK  600
ESLEATCQEA IPQRKAQPSK ISNKLQSQSN FARENETTLP VVKSEPVEDA VATFPSFTIS  660
CLATDRQSYL ELPKSLPVSL KATNGRSKMD RRVVYLQGPD NRLWPVLYIQ KFFFRTLANG  720
WEAFSMANNI EKGDRCTIAV IDQTKGICAV NVVKMRDDME FYEEWEQQPL INLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464207.10.0PREDICTED: uncharacterized protein LOC101297645 isoform X1
RefseqXP_011464208.10.0PREDICTED: uncharacterized protein LOC101297645 isoform X1
TrEMBLA0A2P6P5870.0A0A2P6P587_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301039.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-10B3 family protein