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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | FANhyb_rscf00000062.1.g00002.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 226aa MW: 25538.9 Da PI: 4.6906 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 57.5 | 3.5e-18 | 1 | 49 | 38 | 87 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf++l+a
FANhyb_rscf00000062.1.g00002.1 1 MERMGYKRNPKRCKEKWENINKYFKKVKESNKVR-PEDAKTCPYFHELDA 49
7899****************************97.99999********85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 1.8E-12 | 1 | 50 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 226 aa Download sequence Send to blast |
MERMGYKRNP KRCKEKWENI NKYFKKVKES NKVRPEDAKT CPYFHELDAL YRKRILGGGS 60 SSSLGNQNIQ QQAPPQPKLD SAAQGTVTNA QQTVAATDQS VNKSGDHSPS LQKNLFGDAP 120 EEAAKKPEDI VKELMGQQQQ QQQHHHQVLN QQGVQQQLVV EDYDRVEEGD SDVNLDQDEE 180 EDEEDEEMDD ESRKMDYKIE FQKQQNTGPS SNGGGNGAPS FLAMVQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024175245.1 | 5e-92 | trihelix transcription factor GTL1 isoform X1 | ||||
| TrEMBL | A0A2P6P4D7 | 1e-90 | A0A2P6P4D7_ROSCH; Putative transcription factor MYB family | ||||
| STRING | XP_004309494.1 | 2e-85 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF373 | 34 | 181 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76880.1 | 6e-27 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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