PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000062.1.g00023.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 351aa MW: 38725.4 Da PI: 9.3183

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000062.1.g00023.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.6	9.4e-32	2	106	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ FANhyb_rscf00000062.1.g00023.1 2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLD 80 89*************************966778999************************************* PP TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 76 egDfvvFkld.gr.sefelvvkvfrk 99 +gD+v F++ g+ + +l++ ++r+ FANhyb_rscf00000062.1.g00023.1 81 AGDIVSFQRGlGElGKDRLYIDWRRR 106 ******777899999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.09E-28	1	90	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-39	1	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.16E-26	1	89	No hit	No description
SMART	SM01019	3.4E-22	2	107	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.579	2	107	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.8E-29	2	106	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRTGKP WRFRYSYWNS 60 SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG LGELGKDRLY IDWRRRPNAP DPNHHHHHAL 120 HHHSYGIPPP HHYSFHRSVP WSPLLMRPPG SSSVTAREHH LQQLNYSMNI HPYRNSGYSS 180 GSAGGGGGYG YGNVVNMNMN TNPVCTGPVY YLRSGGVGGG AVFPQQLHEQ EGSTASAAAH 240 VHSHHQVGLG QLSRVNVVEP MVLESVPVVH GKVAAAGKRL RLFGVNMDCA VSDQSADECD 300 ILSSTTTTAA MALSQPPLQL RLYDGTPATT DFFNRGKTSS SSTSMSLDFD A

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRTGKP WRFRYSYWNS  60
SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG LGELGKDRLY IDWRRRPNAP DPNHHHHHAL  120
HHHSYGIPPP HHYSFHRSVP WSPLLMRPPG SSSVTAREHH LQQLNYSMNI HPYRNSGYSS  180
GSAGGGGGYG YGNVVNMNMN TNPVCTGPVY YLRSGGVGGG AVFPQQLHEQ EGSTASAAAH  240
VHSHHQVGLG QLSRVNVVEP MVLESVPVVH GKVAAAGKRL RLFGVNMDCA VSDQSADECD  300
ILSSTTTTAA MALSQPPLQL RLYDGTPATT DFFNRGKTSS SSTSMSLDFD A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-64	1	109	7	116	B3 domain-containing transcription factor NGA1
5os9_B	2e-64	1	109	7	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309568.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
Swissprot	O82799	2e-74	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	A0A2P6P4B6	0.0	A0A2P6P4B6_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004309568.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2338	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-65	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]