PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000069.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 286aa    MW: 32775.3 Da    PI: 5.7633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000069.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14551347
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                                    +WT+eEd+ll +++ ++G g W+ I++      gRt++++k++w+ +
  FANhyb_rscf00000069.1.g00001.1  5 PWTAEEDQLLRKCIDKYGQGKWHQIPHLAArlPGRTGNDVKNYWNCH 51
                                    7************************99988888***********977 PP
2Myb_DNA-binding23.71.1e-071171392447
                                     HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqky 47 
                                     W+++a++++ gRt++++k++w+ +
  FANhyb_rscf00000069.1.g00001.1 117 WSLVAARLP-GRTGNDVKNYWNCH 139
                                     *********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.419156IPR017930Myb domain
SMARTSM007178.6E-13254IPR001005SANT/Myb domain
PfamPF002493.6E-12549IPR001005SANT/Myb domain
CDDcd001671.11E-13552No hitNo description
SuperFamilySSF466891.29E-16556IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-19562IPR009057Homeodomain-like
SMARTSM007171.694142IPR001005SANT/Myb domain
PROSITE profilePS500906.21499140IPR017877Myb-like domain
SuperFamilySSF466891.29E-16112139IPR009057Homeodomain-like
PfamPF002491.1E-5116137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-11116151IPR009057Homeodomain-like
CDDcd001677.82E-5117140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGGIPWTAEE DQLLRKCIDK YGQGKWHQIP HLAARLPGRT GNDVKNYWNC HLSKKLNAQE  60
PHDDHRKINH ASNVQVIRPQ PSKYASSNSK RPMICSTLED QTCQALEESR SSMAMLWSLV  120
AARLPGRTGN DVKNYWNCHL SKKLNAQEPH DDHQKINHAS NVQVIRPQPS KYASSNSKRP  180
MICNTLEDQT YQALEESNRS SKAILCSIDR DQGQISQIVE REDSNNPCVK EEHEGNNDFI  240
GDFGMVDLDQ FEQVVEQYDQ EVNNNSNKWE WDDSILDMDL WISDSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302122.11e-133PREDICTED: transcription factor MYB90-like
TrEMBLA0A068CS411e-117A0A068CS41_ROSHC; R2R3-MYB
STRINGXP_004302122.11e-133(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-22myb domain protein 113