PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000073.1.g00015.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SRS
Protein Properties Length: 370aa    MW: 39249.1 Da    PI: 7.5433
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000073.1.g00015.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022182e-671302894154
                          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrk 75 
                                      t+sCqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpa+krrerqqq+ +a +++++++         +++kr 
  FANhyb_rscf00000073.1.g00015.1 130 STVSCQDCGNQAKKDCVHMRCRTCCKSRGFECATHVKSTWVPASKRRERQQQHLTALQQQQQHEtvqvirgGGENPKRL 208
                                     5789*********************************************887766655555555589998867777888 PP

                          DUF702  76 relkskkqsalsstk..lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                                     re++ ++ s+ ss    +   ++++ le  ++P+e+ s+a+frcvrvss+dd+e+++aYqtav+i+GhvfkGiLy+qG+
  FANhyb_rscf00000073.1.g00015.1 209 RESNPNNPSSNSSLGacTRIITNTSGLELGNFPPELTSPALFRCVRVSSIDDDEDQYAYQTAVNIAGHVFKGILYNQGP 287
                                     8775555554443321133344556788889***********************************************9 PP

                          DUF702 153 ee 154
                                     ++
  FANhyb_rscf00000073.1.g00015.1 288 AD 289
                                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.1E-66131288IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-27133175IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-27240287IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAGFFSLGGG GSRNPESRNQ YQQPQPSDIP PETLFWYKNN EEGMPNKGSF ELWQHQQQQL  60
QHHHHQQQQH QLHQLQLQQD LYASAAALGV GPSSINVSDE SSSRPFMLMR PSSSGGGGGG  120
GGGGGSTSGS TVSCQDCGNQ AKKDCVHMRC RTCCKSRGFE CATHVKSTWV PASKRRERQQ  180
QHLTALQQQQ QHETVQVIRG GGENPKRLRE SNPNNPSSNS SLGACTRIIT NTSGLELGNF  240
PPELTSPALF RCVRVSSIDD DEDQYAYQTA VNIAGHVFKG ILYNQGPADN NNYNMSTGGE  300
SSSGGGGGGG GGGGVIQPLN LINAAPTTAV SGGVTVAAAS GSGTLMDPNS LYPANPFMAS  360
GTQFFLPPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113125SGGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462565.10.0PREDICTED: protein SHORT INTERNODES-like
SwissprotQ9XGX01e-87SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A2P6RM301e-158A0A2P6RM30_ROSCH; Putative transcription factor STY-LRP1 family
STRINGXP_004289107.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.19e-75Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]