PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000075.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 429aa    MW: 47918.3 Da    PI: 9.0794
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000075.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-143484251593
                                     -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                      l +p +f+ ++  g+   +s  +tl+ e  r+W+v ++++k++ +  +  +GWk Fvk+n+L++gD + F+l+g+ + 
  FANhyb_rscf00000075.1.g00004.1 348 YLNIPAHFTIKNlcGIG--SSCNVTLQIEGKRTWTVLCSVSKCGLKaRFNPAGWKAFVKDNQLEAGDHCRFELIGELKL 424
                                     389*********98655..45579999999********7766665534455**********************995333 PP

                                     ..E CS
                              B3  91 elv 93 
                                       +
  FANhyb_rscf00000075.1.g00004.1 425 --K 425
                                     ..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5174626.0791211IPR001932PPM-type phosphatase domain
SMARTSM003323.6E-162209IPR001932PPM-type phosphatase domain
SuperFamilySSF816062.09E-358212IPR001932PPM-type phosphatase domain
CDDcd001435.04E-3874211No hitNo description
Gene3DG3DSA:3.60.40.105.2E-4182214IPR001932PPM-type phosphatase domain
PfamPF004812.4E-3386199IPR001932PPM-type phosphatase domain
Gene3DG3DSA:2.40.330.105.1E-19329428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-19330428IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-17334428No hitNo description
PROSITE profilePS5086310.574334429IPR003340B3 DNA binding domain
SMARTSM010192.7E-6336427IPR003340B3 DNA binding domain
PfamPF023629.1E-12345426IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGFEIEAEAA EDKGLRQSME DAWVVLLDAS LGFKGTLRGM ARWCYSCMCL DIRKNKQVNN  60
YDVPKRGSWH LVYDCAAGSR LLKAIVLTRE HKAIYAQERA RIQKAGGSVG SNGRLQGRLE  120
VSRAFGDRQF KKFGVVATPD IHSFDLTERE HFIILGCDGL WGVIGPSDAV DFVQKQLKEG  180
LPVTAISRSL VREAVRERRC KDNCTAIIIL LRHNWNCCPL VSCSVMKRPG FLENVAVDYC  240
CRTKAKYLLK SALNLAFLLD GHNVTPNGFS EQQRGKRTCL PGGLSKLLLE DCYWCGSPRW  300
EGSSFPSASS AARDQNSNNL QDFHGANKYK VDKPRFWITM TASYLSVYLN IPAHFTIKNL  360
CGIGSSCNVT LQIEGKRTWT VLCSVSKCGL KARFNPAGWK AFVKDNQLEA GDHCRFELIG  420
ELKLKVVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yzh_A2e-1470208120288Protein phosphatase 2C 57
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030345.17e-91probable protein phosphatase 2C 8 isoform X4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-07related to vernalization1 1