PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000075.1.g00020.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB

Protein Properties

Length: 1036aa MW: 114705 Da PI: 5.0433

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000075.1.g00020.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	5.7e-11	458	502	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WTt+Ed+ ++ +v++ G ++W Ia+ +g++Rt+ qc r+q FANhyb_rscf00000075.1.g00020.1 458 GPWTTDEDKMILYLVQKNGVNDWINIAEAVGTNRTPFQCLARYQR 502 89*****************************************96 PP
2	Myb_DNA-binding	38.5	2.7e-12	511	554	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ +G ++W ++a+ ++ gRt+ qc +rw k FANhyb_rscf00000075.1.g00020.1 511 REWTKDEDAQLSFAVEAFGERDWQSVASALN-GRTGTQCSNRWKK 554 68***************************.*********98 PP
3	Myb_DNA-binding	44.4	3.8e-14	564	607	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + FANhyb_rscf00000075.1.g00020.1 564 GKWTPEEDKRLIVAQMLFGSKNWNKTAQFVP-GRTQAQCRDRYVN 607 79***************************.*********77 PP
4	Myb_DNA-binding	45.4	1.8e-14	617	659	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l+ a+++ G W+++a++++ +Rt+++c rw + FANhyb_rscf00000075.1.g00020.1 617 EWTEEEDSRLIAAIEECGHC-WSKVAAYVP-NRTDNMCWRRWKVL 659 6***************99.*****.*********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.854	352	451	IPR017877	Myb-like domain
SMART	SM00717	0.0064	356	453	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-10	359	375	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-10	424	463	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.24E-18	433	501	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.26	452	504	IPR017930	Myb domain
SMART	SM00717	2.5E-10	456	506	IPR001005	SANT/Myb domain
CDD	cd00167	4.26E-8	459	504	No hit	No description
Pfam	PF13921	3.0E-13	460	521	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-14	464	513	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.73E-19	484	559	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.289	505	560	IPR017930	Myb domain
SMART	SM00717	4.3E-12	509	558	IPR001005	SANT/Myb domain
CDD	cd00167	2.57E-10	512	556	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-15	514	559	IPR009057	Homeodomain-like
PROSITE profile	PS50090	9.663	558	609	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.7E-25	561	656	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-12	562	611	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	564	607	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-15	564	613	IPR009057	Homeodomain-like
CDD	cd00167	3.13E-11	565	609	No hit	No description
PROSITE profile	PS51294	22.754	610	664	IPR017930	Myb domain
SMART	SM00717	5.2E-11	614	662	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-15	614	658	IPR009057	Homeodomain-like
CDD	cd00167	2.24E-11	617	660	No hit	No description
Pfam	PF00249	3.9E-13	617	658	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MSPLAENDEI PYYDDDDEYD DDGFNDDIEA LRRACMITGQ DPDDVIAKND QGKNPSVHQN 60 DDDMDVGASS APNSDSDFRR GPRAAPQNQE PILRYLSEQA SLAEASLYFA AAFRLRRGGG 120 RLPNATRREE TFRCLRERYF RVRSEMVTST IHRNAYICDT GITELSDFKF YLNINGKSAV 180 QIDPSCKSVE ETCNEVSGSE AHERFPYLAT DTEEGQPSTS IEWNQSDSCK PSMSPTKSSG 240 FPKSALAFWD AIIKNRSCQK FLGSKLIQIK AKIEENNKLK QRVKILRDFQ AHCKRRTGEA 300 LSQKKDPRVQ LILTKRPRVD SKAHDRAISA LSYGPEENSH VADYRKALTK FPVSLDRKNW 360 SEAEKKDLQK GIRQQFQEMV LQSSMDESSY SETRHGDSDA IDNILASIKD LEITPYSIKE 420 FLPKVNWEQL ASMYVPGRSG GECEARWLNW EDPLVNHGPW TTDEDKMILY LVQKNGVNDW 480 INIAEAVGTN RTPFQCLARY QRSLNASILK REWTKDEDAQ LSFAVEAFGE RDWQSVASAL 540 NGRTGTQCSN RWKKSLHPTR TRAGKWTPEE DKRLIVAQML FGSKNWNKTA QFVPGRTQAQ 600 CRDRYVNSLE PSLKWCEWTE EEDSRLIAAI EECGHCWSKV AAYVPNRTDN MCWRRWKVLF 660 PDEVPLLREE KKIRKTALIR NFVDREKERP ALGPNDFLLQ DGTSRKSLTR KTGGLSRVPK 720 KIKPRRHRNN AQLFSEEEPG TSNSEEPVYL LLVGSASLLC LLSLCLQIDL QILNNGLALQ 780 IPDLNALLSR SAQPVPVGAK AQSMNNRTSI KRVQPLSLGQ IPQQNDSIFA SAGTQGAIRR 840 HRHGVDIAIV ALEGVPQLAV GQVPDFHSAV PRGRDDSGLE RVGAEPDAAD PVVVAVLLLD 900 GVLALAESVP ELDRAVARGR DDLTVVDGEG DGEDVLGVAN EAAGGDALGE VPEAELAVPG 960 AGEGELAVGG EDDVLDEVGV AGEAAAGDAV RVLVLVELPE DDGFVAGGGD DHLGVVDGDG 1020 DGGHHVGVGP HGALKD

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MSPLAENDEI PYYDDDDEYD DDGFNDDIEA LRRACMITGQ DPDDVIAKND QGKNPSVHQN  60
DDDMDVGASS APNSDSDFRR GPRAAPQNQE PILRYLSEQA SLAEASLYFA AAFRLRRGGG  120
RLPNATRREE TFRCLRERYF RVRSEMVTST IHRNAYICDT GITELSDFKF YLNINGKSAV  180
QIDPSCKSVE ETCNEVSGSE AHERFPYLAT DTEEGQPSTS IEWNQSDSCK PSMSPTKSSG  240
FPKSALAFWD AIIKNRSCQK FLGSKLIQIK AKIEENNKLK QRVKILRDFQ AHCKRRTGEA  300
LSQKKDPRVQ LILTKRPRVD SKAHDRAISA LSYGPEENSH VADYRKALTK FPVSLDRKNW  360
SEAEKKDLQK GIRQQFQEMV LQSSMDESSY SETRHGDSDA IDNILASIKD LEITPYSIKE  420
FLPKVNWEQL ASMYVPGRSG GECEARWLNW EDPLVNHGPW TTDEDKMILY LVQKNGVNDW  480
INIAEAVGTN RTPFQCLARY QRSLNASILK REWTKDEDAQ LSFAVEAFGE RDWQSVASAL  540
NGRTGTQCSN RWKKSLHPTR TRAGKWTPEE DKRLIVAQML FGSKNWNKTA QFVPGRTQAQ  600
CRDRYVNSLE PSLKWCEWTE EEDSRLIAAI EECGHCWSKV AAYVPNRTDN MCWRRWKVLF  660
PDEVPLLREE KKIRKTALIR NFVDREKERP ALGPNDFLLQ DGTSRKSLTR KTGGLSRVPK  720
KIKPRRHRNN AQLFSEEEPG TSNSEEPVYL LLVGSASLLC LLSLCLQIDL QILNNGLALQ  780
IPDLNALLSR SAQPVPVGAK AQSMNNRTSI KRVQPLSLGQ IPQQNDSIFA SAGTQGAIRR  840
HRHGVDIAIV ALEGVPQLAV GQVPDFHSAV PRGRDDSGLE RVGAEPDAAD PVVVAVLLLD  900
GVLALAESVP ELDRAVARGR DDLTVVDGEG DGEDVLGVAN EAAGGDALGE VPEAELAVPG  960
AGEGELAVGG EDDVLDEVGV AGEAAAGDAV RVLVLVELPE DDGFVAGGGD DHLGVVDGDG  1020
DGGHHVGVGP HGALKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	6e-31	426	656	6	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-31	426	656	6	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301260.1	0.0	PREDICTED: myb-like protein L
TrEMBL	A0A2P6P1X0	0.0	A0A2P6P1X0_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004301260.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7441	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-172	myb domain protein 4r1