PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000094.1.g00017.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 552aa    MW: 59937.3 Da    PI: 6.3252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000094.1.g00017.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.7e-31302360259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  FANhyb_rscf00000094.1.g00017.1 302 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 360
                                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925296362IPR003657WRKY domain
SuperFamilySSF1182904.18E-26299362IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30299362IPR003657WRKY domain
SMARTSM007741.4E-37301361IPR003657WRKY domain
PfamPF031061.3E-25303360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MCSLSMPIGM ENYQGDLTDI LRAGAAATGS SSSSAYHSES MNSESWQFSS DDNHSMKTSI  60
AMEEVEDARD NFGDPFSSYI RDPLLHELTS TGGFFSSTPE MNISVDMEAR AAPFGASHVL  120
GQHHHQGEVS KRSACNNIFS RMLQISPGGD VAGCDSVAVL GSSPRGGGGI KAGPGGVMVG  180
SDMINANSSK GCLLENTGVG VQISSPRNPG IKRRVLLIHE EVYKLSYASW DCFPGGGALA  240
ITYLAFILYL FNPCQTHLTI ETSAVFWNNR LNQAMKSQAK KVVCIPAPAA ANSRPTGEVV  300
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  360
WPTQRNALAG STRSQPSKAG AGSKTSPNTG HHQKPSSPAK EEQKAAADGM NEDNHVLSPV  420
NATVGSSSTV KEEFEDIEKL QLEIDQPLHH HHQNDSDHHH QFSNHDQGFP YRPSMPVQSN  480
NQSEDFFADL GEIEADPLNL LFSQCFTADE QQKGGNKGAM DPFNLFDWSG DQNTNITPNN  540
DPSFGHEAKR GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25276363280Disease resistance protein RRS1
5w3x_D2e-25276363280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293685.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A2P6Q6L81e-165A0A2P6Q6L8_ROSCH; Putative transcription factor WRKY family
STRINGXP_004293685.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.18e-69WRKY DNA-binding protein 14