PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000096.1.g00010.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 216aa MW: 24985.9 Da PI: 10.8772

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000096.1.g00010.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	162	185	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +L++H r H FANhyb_rscf00000096.1.g00010.1 162 YVCGVCGRKCKSNLDLTKHFRQlH 185 9******************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.66E-5	155	190	No hit	No description
PROSITE profile	PS50157	10.99	162	190	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	164	185	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MVHPIIISNP TFTCIKPLPL PFLNSSQSPF FNPQLTQTLN PKPSSVSFHT TPTWRSYTTV 60 TSAANNSEID MVRNKQGVYT PKHKKVVILW DLDNKPPRGP PYQAAMALKQ VAQHFGEVVD 120 VSAYANRHAF IHLPNWVVEQ RRERKQLDIL ERKGMVTPPE PYVCGVCGRK CKSNLDLTKH 180 FRQLHERERQ KKLNRMRSLK GKKRQRFKER FISGES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292807.1	1e-152	PREDICTED: uncharacterized protein LOC101312318
TrEMBL	A0A2P6Q0K3	1e-127	A0A2P6Q0K3_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004292807.1	1e-151	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	9e-94	C2H2-like zinc finger protein