PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000101.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 356aa    MW: 38022.2 Da    PI: 7.9093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000101.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-184087148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  FANhyb_rscf00000101.1.g00008.1 40 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 87
                                    89******************************99************97 PP
2Myb_DNA-binding45.61.6e-1498138648
                                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                      +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  FANhyb_rscf00000101.1.g00008.1  98 SDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 138
                                     68***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-223189IPR009057Homeodomain-like
PROSITE profilePS5129416.8183587IPR017930Myb domain
SuperFamilySSF466891.1E-2837134IPR009057Homeodomain-like
SMARTSM007177.9E-143989IPR001005SANT/Myb domain
PfamPF002494.1E-164087IPR001005SANT/Myb domain
CDDcd001679.54E-124287No hitNo description
PROSITE profilePS5129423.54588142IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2390143IPR009057Homeodomain-like
SMARTSM007171.7E-1292140IPR001005SANT/Myb domain
PfamPF002494.1E-1399138IPR001005SANT/Myb domain
CDDcd001673.42E-1199138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRNPSSSSSS GAKAKSSAAA AGVSSSSSKT PCCVKVGLKR GPWTPEEDEL LANYIKKEGE  60
GRWRTLPKRA GLLRCGKSCR LRWMNYLRPS VKRGQIASDE EDLILRLHRL LGNRWSLIAG  120
RIPGRTDNEI KNYWNTHLSK KLISQGIDPR THKPLNPDPT SSADHHAAVN VNGASSSKNN  180
HHHGGTSSNP NPKSPNTSSS LEEAAAPVAR ENGYLVSNDD LGVIVHGAAG YGNVIVHGAA  240
GYGNVMTPND SDASAAGMGA LRSNLLLGNE EDEDMNCCTD DVFSSFLNSL INEDPFAAAA  300
SQHQLQPLQV MQQPNGIAQP AADSSAPAFG GWESAVLMSS AFIQNDPHRV NINQTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26381425108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295005.10.0PREDICTED: transcription repressor MYB5
TrEMBLA0A3Q8QF920.0A0A3Q8QF92_FRAAN; R2R3-MYB transcription factor MYB5
STRINGXP_004295005.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-82myb domain protein 5