PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000102.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 1150aa    MW: 126156 Da    PI: 6.2762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000102.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.1e-0711281150326
                                      S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                                      ++ C+ ++++G+Ck G++C++ H+
  FANhyb_rscf00000102.1.g00003.1 1128 QRVCK-YYESGYCKKGASCSYLHP 1150
                                      789**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.21E-882144IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-993152IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.61897163IPR019787Zinc finger, PHD-finger
CDDcd155681.29E-1899144No hitNo description
SMARTSM002496.3E-799145IPR001965Zinc finger, PHD-type
PROSITE patternPS013590100160IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475924.58E-19303379IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.7E-24304383IPR003121SWIB/MDM2 domain
PfamPF022016.6E-14306378IPR003121SWIB/MDM2 domain
SMARTSM001510.0029315385IPR019835SWIB domain
PROSITE profilePS5136015.988412545IPR004343Plus-3 domain
SMARTSM007197.8E-26414522IPR004343Plus-3 domain
PfamPF031263.3E-17435520IPR004343Plus-3 domain
SuperFamilySSF1590422.22E-24436541IPR004343Plus-3 domain
SuperFamilySSF552771.27E-15689745IPR003169GYF domain
CDDcd000723.12E-15692749No hitNo description
PROSITE profilePS5082913.619692746IPR003169GYF domain
SMARTSM004441.1E-14693748IPR003169GYF domain
PfamPF022135.3E-10694738IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.8E-16694746IPR003169GYF domain
SuperFamilySSF902292.04E-611251149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06511251150IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-511281150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-411291149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MELQQVQVYK PALGEQTEQP EMMSIDQCQS IGDLDDSQLV GAHEAAAALV AVKEVRMGEM  60
AAEVKEATSS VGKKRRGRPP GPGRPKTTPV RKKNDEEDVC FICFDGGSLV LCDRRGCPKA  120
YHPSCIKRDE AFFKSKAKWN CGWHICSSCQ KASHYMCYTC TYSLCKGCIK DADYQCVRGN  180
KGFCGTCMRT IMLIENVQGN KEAAQVDFDD KSSWEYLFKV YWILLKGQLS LTVDDLIKAK  240
NPWKGAAVVA CPRGASGEVH VGHKTNDLGS LNSCVDLGAA NSNGSNKRPR IGDGGMSLPE  300
GTNWASKELL EFVAYMKNGD VSVLSQFGVQ ALMLEYIKKN NLRDPHRKCQ IICDTRLRNL  360
FRKECVGHFE MLKLLEYHYL IKECSTAENN IGAGVLSAVA TDMEIDGNYD NQLMMCSDKR  420
RKTRKIDERN LLDDVDKFNE RIVGSIVRIR ISSSDQKHDS YRLVQVIGTS KVAEGYKVGT  480
RTTDMKLEIS NLDKREVLPI DQISDQEFSQ DECKRLRQSI KCGLIKRFTV GEIQDKAMAL  540
RAIRVNDCLD SPEERQRRLG EVPEVHTDPE MDPSYESEDN AGEDNKQDGN VKTRRSVSGR  600
KGRESFSPQM EGGVSNNSGN KAQNNQLREA LGINGSNTTT NQATPTSLVR CGGNDESAVE  660
LNISSEVASE NLSVSFSAVM KANLPVESFE MEKIWHYQDP SGKIQGPFAM VQLCKWDTTG  720
VFPPDHRIWR INEKQDDSIL LTDALKGQYC KKPLLPHDSN IQSQGLKVAL DGTNSGLDGR  780
WNNSINATPI DGKKVEESWN TKKDGQIFQN SEGFSPAPEP GKGDALSSTC DLQLPSEAMV  840
TDEPLGVSQA SILDLQQTSG VCSSTSPELQ GDRKPSDVAV KELEANVSVD QLEAGEIKTA  900
APSKECWDMS STDDPWKARL ESTGTSIEAV QGNTNAKWEG SDPGGTKVLD LQQMTGVLSS  960
KSTEAERKPS NVSVNQLDAN VSVNQLEPGE ILMTAPSKES LCMSATDNPW KARLESRDAS  1020
YEAIQGNVNA GWGGDQGSTN RGWGGPDPGS ANVGWRGGQG SIQGNTVINS GAPAGGMWEG  1080
QSRYGGDRRG RGFPNRDVGF GRGRFAGDRQ ASYGNRNGGS FRQPPRGQRV CKYYESGYCK  1140
KGASCSYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A3e-1386166781Histone-lysine N-methyltransferase NSD3
4gnd_C3e-1386166781Histone-lysine N-methyltransferase NSD3
4gne_A3e-1386166781Histone-lysine N-methyltransferase NSD3
4gnf_A3e-1386166781Histone-lysine N-methyltransferase NSD3
4gng_A3e-1386166781Histone-lysine N-methyltransferase NSD3
4gng_D3e-1386166781Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287837.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
TrEMBLA0A251NCG80.0A0A251NCG8_PRUPE; Uncharacterized protein
STRINGXP_004287837.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding