PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000103.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 177aa MW: 19585.9 Da PI: 4.528

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000103.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41	3.5e-13	25	113	6	99
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 +++ +l+ g l +p+ +++ g ++ l+ ++g W ++l +k+ g+++l+kGW eF++ L+ g ++F++ FANhyb_rscf00000103.1.g00004.1 25 VSAQALEDGKLEIPRAVVRQSGDL--LAEMILLKVPKGANWVIEL--TKSNGKIWLQKGWPEFARHYALEHGSLLLFSF 99 5677889999******999755..555899999******..**************************** PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 +g+ s+ +v++f++ FANhyb_rscf00000103.1.g00004.1 100 QGDySCL--RVQIFKR 113 98999..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.1E-17	17	114	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.4E-18	17	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.25E-14	19	112	No hit	No description
PROSITE profile	PS50863	13.225	20	114	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-6	21	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-11	25	114	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAIHRRRIQQ GSVVPVTTPS FIAIVSAQAL EDGKLEIPRA VVRQSGDLLA EMILLKVPKG 60 ANWVIELTKS NGKIWLQKGW PEFARHYALE HGSLLLFSFQ GDYSCLRVQI FKRNTMEINY 120 PPLEMNYPPN SSITVEMNHA SSHDDGPDPF SDNDGPDADD ENGDNDDADD GGAHDGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300565.1	1e-129	PREDICTED: B3 domain-containing protein At3g18960-like
TrEMBL	A0A2P6RMY5	2e-70	A0A2P6RMY5_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004300565.1	1e-129	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	8e-18	B3 family protein