PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000103.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 281aa    MW: 32767.8 Da    PI: 9.7665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000103.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-1517941699
                                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                              B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                                      +p kf+ ++g     sk ++l+ +sg +W+v++  +k+++++++ kGW eF k   L+ g fv+F+++g+s f   v +
  FANhyb_rscf00000103.1.g00005.1 17 KKIPPKFVMKYGDY--LSKSVRLKLPSGCQWQVEV--TKSDSEVWFDKGWPEFFKFYTLNYGHFVIFTYHGNSMF--EVCI 91
                                    579********866..8899***************..**********************************9999..9999 PP

                                    E-S CS
                              B3 97 frk 99
                                    f++
  FANhyb_rscf00000103.1.g00005.1 92 FDR 94
                                    987 PP
2B343.84.4e-14187280298
                                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                     + +++ +++  +  +++p +f+ ++ +  ++   ++l     rsW  +l++    g+  +++GW eFvk+n+L+ gD++
  FANhyb_rscf00000103.1.g00005.1 187 IMIFMEPSYIDRYSVSIPFRFVMNFAKFRQQ--AVKLLV-GDRSWPARLNVFSLYGKAKISSGWHEFVKENHLRLGDVC 262
                                     556777888888889*******777544334..455544.55*******88666677889******************* PP

                                     EEEE-SSSEE..EEEEE- CS
                              B3  81 vFkldgrsefelvvkvfr 98 
                                     +F+l++ ++  ++v++fr
  FANhyb_rscf00000103.1.g00005.1 263 IFELMKVNDLVPKVHIFR 280
                                     *****99*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.1E-5895IPR003340B3 DNA binding domain
CDDcd100178.99E-141393No hitNo description
Gene3DG3DSA:2.40.330.102.2E-181395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-191594IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-121794IPR003340B3 DNA binding domain
PROSITE profilePS5086311.5891995IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18179280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-17180280IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-12186280IPR003340B3 DNA binding domain
CDDcd100172.75E-15186280No hitNo description
PROSITE profilePS5086312.844186281IPR003340B3 DNA binding domain
SMARTSM010192.2E-7187281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSAFRQAFSA TTPRFFKKIP PKFVMKYGDY LSKSVRLKLP SGCQWQVEVT KSDSEVWFDK  60
GWPEFFKFYT LNYGHFVIFT YHGNSMFEVC IFDRTATEIE YPIIMDKCYV ESEPSIKKLE  120
DFIPCPKIRD NSPSPSARLP RRRRTDSPTT EANIKGKEDD FSRKNDGGDP DTALQRAKAF  180
KSENAFIMIF MEPSYIDRYS VSIPFRFVMN FAKFRQQAVK LLVGDRSWPA RLNVFSLYGK  240
AKISSGWHEF VKENHLRLGD VCIFELMKVN DLVPKVHIFR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1616328025141B3 domain-containing transcription factor VRN1
4i1k_B1e-1616328025141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465842.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6RN231e-144A0A2P6RN23_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301863.11e-173(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-27B3 family protein