PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000103.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 1267aa    MW: 142665 Da    PI: 9.5142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000103.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.8e-132412914090
                                     ETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  40 desgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                     ++s ++W+vk++y  kks++++l  GW++Fv++n+Lk+gD++ F l++r ef
  FANhyb_rscf00000103.1.g00006.1 241 TLSAKTWSVKFKYdHKKSKAHFLN-GWSDFVRDNHLKVGDMCGFILIDRYEF 291
                                     3455*********66666668888.********************9998776 PP
2B338.52e-126637391494
                                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                     +++ +  +f++++ + k+++++l++ed   rsW v+l    +++    l++GW +F+k++ LkegD+++F+l++ ++  
  FANhyb_rscf00000103.1.g00006.1 663 KNVNVQASFFKSFFNRKKQTVKLQVED---RSWPVNL--VPNGNFaGRLSGGWARFAKEHCLKEGDVCIFELTEMNGSV 736
                                     446777889989877777776777666...*******..5555555689**********************98755554 PP

                                     .EE CS
                              B3  92 lvv 94 
                                     l+v
  FANhyb_rscf00000103.1.g00006.1 737 LKV 739
                                     454 PP
3B346.56.6e-1599210612194
                                      HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                              B3   21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                                      kf ++h    +++ t+tl+ ++grsW+v+l+y   + +  ++++W  Fv+ n+Lk+gD++vF+l++ sef  ++
  FANhyb_rscf00000103.1.g00006.1  992 KFSKRHLT--NQPATVTLQVLDGRSWSVQLKYYHERAEARFQNCWPLFVRGNNLKVGDVCVFTLINCSEF--LF 1061
                                      45555643..47789****************99999999************************9975776..43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.251172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-13371IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-12371IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-81270No hitNo description
SuperFamilySSF1019361.43E-13208299IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.017211299IPR003340B3 DNA binding domain
CDDcd100171.39E-11233295No hitNo description
PfamPF023621.3E-10241291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-11241294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124245299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-9374447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-9375447IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-6379447No hitNo description
PROSITE profilePS508637.528379478IPR003340B3 DNA binding domain
SMARTSM010190.16380469IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-7502564IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-8503562IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-10508569No hitNo description
Gene3DG3DSA:2.40.330.103.1E-18646741IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-14648741IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.068650745IPR003340B3 DNA binding domain
SMARTSM010198.0E-9653743IPR003340B3 DNA binding domain
PfamPF023621.1E-9665740IPR003340B3 DNA binding domain
CDDcd100179.84E-13670741No hitNo description
SMARTSM010190.71751828IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-11778836IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-11780835IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.346780828IPR003340B3 DNA binding domain
CDDcd100173.37E-7785826No hitNo description
Gene3DG3DSA:2.40.330.105.6E-179571062IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-179591066IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-159621063No hitNo description
SMARTSM010191.6E-69641069IPR003340B3 DNA binding domain
PfamPF023627.8E-139921061IPR003340B3 DNA binding domain
PROSITE profilePS5086310.9699921067IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1267 aa     Download sequence    Send to blast
MIKHGKNLSS LVCLKLPSGS DWEVELRRCN GKAWIEKGWP EFSRFCSVDY GYFLVFGYEG  60
NSTFEVCIFD RCCIEIDYPI TLSTVDEDEA DGLSIEILDS SPCLKTREKP SIVCPPCKKM  120
RTSLSSNSDR ISEDESAPPY SMVYNQKTMP IKDSHCSISV MKGVEGDFLA VENTAGGSCC  180
TRRFLKPTLD LEVTENAPKR ATAFKPDGKP FFKISMELSN IHKSILLPAG IATLQVSSGR  240
TLSAKTWSVK FKYDHKKSKA HFLNGWSDFV RDNHLKVGDM CGFILIDRYE FLFEVALPNV  300
EAPSFLMSAG EGRGELIQVQ EKRNPMIKVE NESDMISEFD LSSSFAIVKK PNIGGQVTQR  360
RASRSNIDAA NKFVSENPFF LVTLGTLHKE KSNVYLPASF VENFIKEAKQ TVRLLVKDRS  420
WPVKLFCYGK NSAKLSGGWA AFAKEHRSVG KRRRETDFAT KTDSVCSSRP KTVLKQTRHK  480
NLGRLPPLTT TEKAIALQRA NAFKSDKPSF KMAMQPSHIH FGGKIELPRN FSKRHLKLPA  540
GIAILRIPDG RTWSMKFKYD HKNSKARFSC VILFPTIEAT NHPFPPGYGK GAIDQVEEGS  600
PIVEAESKIK CEIVTNRMPK IYEQVTQKHS TFLRASRISL EAANKFMSEN PYFSVPLRSG  660
LRKNVNVQAS FFKSFFNRKK QTVKLQVEDR SWPVNLVPNG NFAGRLSGGW ARFAKEHCLK  720
EGDVCIFELT EMNGSVLKVH LVTYMGACNH FGQLTGQPKL MVKYLLVTTT LHNEAVLTIV  780
EVTRSNGKVW FEKCWPEFSK FYSLGIGDFL VFEYEGNSEF NVFIFDRSTT EIEYPIKRPK  840
MEEALDNELS VEILEDIPPS PKTRDKTPQP CPQAYKKMKT SSRVKADDVF ENVNTEPLEE  900
PKKNNDFHCS ASKIKSKKDR GGSSSTERFL KQTPGFCGEK HLSNTNEKAS IQRNIASETE  960
KPYFKVVMHP TYIQKVSLPP AFPLYIRLCH LKFSKRHLTN QPATVTLQVL DGRSWSVQLK  1020
YYHERAEARF QNCWPLFVRG NNLKVGDVCV FTLINCSEFL FEVVFYPATE AANCPLSPGH  1080
GKGTIHQVKR KGSPVREVES DCDVICGIGV SGSLETGKNK VSKTGEQVTG RPSSPLTTPG  1140
YNHHEAANNF VSENPFFKVT LGFCHMGKSA VAPGTGGLSL HADSARMSVS RLRVYNCERT  1200
PRVYFACMCV SGLRDLLHLL HEWISPRLGL ELLNISSSPF RIPALARMLA RHPLGFLPWR  1260
KCWLATP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465437.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6RMZ41e-177A0A2P6RMZ4_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301863.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3392222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-23B3 family protein