PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000105.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25610.1 Da    PI: 5.531
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000105.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.8e-29959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien   rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gkl+e+ss
  FANhyb_rscf00000105.1.g00005.1  9 KRIENAASRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSNRGKLFEFSS 59
                                    79***********************************************96 PP
2K-box68.32.5e-2382174798
                           K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                     k+  ++ ++e  +++ + +  +ie +++++R+llG++Les+s+ eL+qLe++Le+sl kiR++Kn +l+eqie+l++ke
  FANhyb_rscf00000105.1.g00005.1  82 KAaRDHDHMELANEDTSSMAMRIELIESSKRKLLGDGLESCSIDELHQLEKDLERSLAKIRDQKNLMLREQIEQLKEKE 160
                                     55355566777788899************************************************************** PP

                           K-box  85 kelqeenkaLrkkl 98 
                                      +l een +L +k 
  FANhyb_rscf00000105.1.g00005.1 161 ISLLEENAELMEKC 174
                                     **********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.768161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.63E-38377No hitNo description
PRINTSPR004043.0E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-30375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2286174IPR002487Transcription factor, K-box
PROSITE profilePS5129713.64890180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVRGKTQMKR IENAASRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSN RGKLFEFSSC  60
SSLNKTIDRF QKRTKDQGLS GKAARDHDHM ELANEDTSSM AMRIELIESS KRKLLGDGLE  120
SCSIDELHQL EKDLERSLAK IRDQKNLMLR EQIEQLKEKE ISLLEENAEL MEKCGMQQIG  180
PPSNGEQYGV EDDDVETESD SQNMEVETEL FIGPPKRQRS AKKIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17159159MEF2C
5f28_B1e-17159159MEF2C
5f28_C1e-17159159MEF2C
5f28_D1e-17159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298725.11e-162PREDICTED: agamous-like MADS-box protein AGL14 isoform X2
SwissprotO827432e-70AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A2P6P7I31e-117A0A2P6P7I3_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004298725.11e-161(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.16e-72AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]