PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000110.1.g00017.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 332aa    MW: 36481.8 Da    PI: 10.3955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000110.1.g00017.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-113383146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                    +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  FANhyb_rscf00000110.1.g00017.1 33 KQKWTPEEEAALKAGVLKHGAGKWRTILSDKEfgtilHLRSNVDLKDKWRN 83
                                    79**************************999888***88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4932889IPR017930Myb domain
SuperFamilySSF466891.35E-143093IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-133284IPR009057Homeodomain-like
SMARTSM007171.0E-63287IPR001005SANT/Myb domain
PfamPF002491.2E-83383IPR001005SANT/Myb domain
CDDcd116601.76E-153485No hitNo description
PROSITE profilePS5150424.79143214IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.4E-16144219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.69E-18144223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.0E-14144209IPR005818Linker histone H1/H5, domain H15
PfamPF005383.3E-10151207IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELRLNWEML ETQLECADFV RKSFGLLLMG APKQKWTPEE EAALKAGVLK HGAGKWRTIL  60
SDKEFGTILH LRSNVDLKDK WRNINVTAIW GSRQKAKLAL KRTTPTPKRD NSPVAVTTAV  120
KSNEETVDTK PDASSGGKVR TESKPPIARL DHLIYEALTN LKEPRGSDKN TITKYIEDQY  180
WAPSNLSKLL STKLKHMTAN GKLVKVKHRF RIPPSSATSE KRRSSSTLLS EGKQKNSTRG  240
DKTVLSILTK SQVDAELTMI RSMTAQEAAA AAAQAVAEAE AAIAAAEEAA REAEAAEAEA  300
EAAQVFAKAA VKALKCRRLG KVLLHVSHHS EN
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288258.10.0PREDICTED: telomere repeat-binding factor 2
RefseqXP_011466138.10.0PREDICTED: telomere repeat-binding factor 2
SwissprotQ9FJW51e-80TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLF2QKW61e-161F2QKW6_ROSRU; Putative MYB transcription factor
STRINGXP_004288258.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-70MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]