PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000112.1.g00019.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 752aa MW: 86205.7 Da PI: 6.4723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000112.1.g00019.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.7	1.2e-10	60	121	1	62
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 ++Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ + + + r C FANhyb_rscf00000112.1.g00019.1 60 DYYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRLPLKLAARQAC 121 59****************************************99988444333344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-8	60	113	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-28	232	325	IPR018289	MULE transposase domain
Pfam	PF04434	2.5E-9	512	546	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.855	512	548	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-8	523	550	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MGHMKSFNPI TSSFEVGEVD AKCRVDLNFP TSTTAMDAAA SIVEEPHDAM EFDSHEAAYD 60 YYKAYAKSVG FGTAKLSSRR SRASKEFIDA KFSCIRYGNK QQSDDAINPR LPLKLAARQA 120 CMSSAGRMGI DPHKNNDVRM RRRKNVNSVS SLFSAYQNVD CLESYLRNQH DKGRSLSLES 180 GDAQVLLECF MRMQEENPKF YYAVDLNEEH RLRNVFWVDA KGMEDYTNFS DVVFFDTTYF 240 TNKYKLPLVL FIGVNHHIQP TLMGCALIAD ETVYTFVWLM QTWLIAMGEQ APRVILSDQN 300 DAIKAAIGAV LPGTRHCFSL WHILEKMHGQ LEFLSMWLDT FMAKFNECIF KSWSEEQFEK 360 RWWKLIDEFN LRDIEWIQSL YRDRTHWVPT FMRDISFAGL SPTSRSTSLN SSFDKYFQVE 420 TSVPEFMERY RVILEDRYEE EAKANFDAWH ETPELKSPSP FEKQLALVYT QEVFKNFQVE 480 VLGAAACHLK KESEDMTTTT YSVKDIEDEQ NYTVEWNESK SDICCSCRSF EYKGYLCRHA 540 IVVLQMSGVF TVPAKYVLQR WTNTAMSRHA MGEKLDEVQF KVRRYNDLCR RAIILGEEGS 600 LSQESYDVAL CAIKEALKQC TSWNTSVESN AKPNDSAIDG VEEFQCGITS DDKISGPKVS 660 TPNKTPRRAG TGKVVARRGK GKLEGTRVGA QDNFHQMHQV SCDTRPPMLM QLHNVVPPQL 720 HNMVPSMFQN VAPAQFHNMG SPNPVQENRL PQ

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MGHMKSFNPI TSSFEVGEVD AKCRVDLNFP TSTTAMDAAA SIVEEPHDAM EFDSHEAAYD  60
YYKAYAKSVG FGTAKLSSRR SRASKEFIDA KFSCIRYGNK QQSDDAINPR LPLKLAARQA  120
CMSSAGRMGI DPHKNNDVRM RRRKNVNSVS SLFSAYQNVD CLESYLRNQH DKGRSLSLES  180
GDAQVLLECF MRMQEENPKF YYAVDLNEEH RLRNVFWVDA KGMEDYTNFS DVVFFDTTYF  240
TNKYKLPLVL FIGVNHHIQP TLMGCALIAD ETVYTFVWLM QTWLIAMGEQ APRVILSDQN  300
DAIKAAIGAV LPGTRHCFSL WHILEKMHGQ LEFLSMWLDT FMAKFNECIF KSWSEEQFEK  360
RWWKLIDEFN LRDIEWIQSL YRDRTHWVPT FMRDISFAGL SPTSRSTSLN SSFDKYFQVE  420
TSVPEFMERY RVILEDRYEE EAKANFDAWH ETPELKSPSP FEKQLALVYT QEVFKNFQVE  480
VLGAAACHLK KESEDMTTTT YSVKDIEDEQ NYTVEWNESK SDICCSCRSF EYKGYLCRHA  540
IVVLQMSGVF TVPAKYVLQR WTNTAMSRHA MGEKLDEVQF KVRRYNDLCR RAIILGEEGS  600
LSQESYDVAL CAIKEALKQC TSWNTSVESN AKPNDSAIDG VEEFQCGITS DDKISGPKVS  660
TPNKTPRRAG TGKVVARRGK GKLEGTRVGA QDNFHQMHQV SCDTRPPMLM QLHNVVPPQL  720
HNMVPSMFQN VAPAQFHNMG SPNPVQENRL PQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307850.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2P6SPW0	0.0	A0A2P6SPW0_ROSCH; Putative transcription factor FAR family
STRING	XP_004307850.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]