PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000116.1.g00013.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 1129aa    MW: 125656 Da    PI: 6.2163
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000116.1.g00013.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.99.3e-23676729155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     k++l Wt+eL +rF+e ++ + G e+A+Pktile+m+v+gLt+e+v+SHLQkYR 
  FANhyb_rscf00000116.1.g00013.1 676 KAKLIWTQELQARFLESIHFI-GLERAVPKTILEVMNVEGLTRENVASHLQKYRQ 729
                                     6799*****************.********************************5 PP
2Response_reg53.71.2e-185156129106
                                     HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
                    Response_reg   9 lvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                                     +++ ++ ++l   +  +v + +++  a   l+ ++  +Dli++D+ +p+mdG+e+ k+ r+e  klp i+v+a + e  
  FANhyb_rscf00000116.1.g00013.1 515 TFLANVSEFLHILNH-QVWTYTNPYIAFSALRVRRnfYDLIITDLYLPDMDGFEVQKRVRQEF-KLPLIIVSADDREHV 591
                                     566777888887778.899999999******999999************************99.*************** PP

                                     HHHHHHTTESEEEESS--HHH CS
                    Response_reg  86 alealkaGakdflsKpfdpee 106
                                     +l+alk+Ga  +++Kp+  ++
  FANhyb_rscf00000116.1.g00013.1 592 ILKALKLGAAHYIVKPVCFDD 612
                                     ****************86665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525408.09E-12179283IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.7E-10183273IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF019262.5E-8192271IPR006073GTP binding domain
PROSITE profilePS5011024.867506621IPR001789Signal transduction response regulator, receiver domain
SMARTSM004485.5E-14512617IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-15513613IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.52E-20513620No hitNo description
SuperFamilySSF521726.97E-23513622IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.2E-23513639No hitNo description
SuperFamilySSF466897.17E-16674733IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-23674733IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-22676729IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MATASLAREI GMAIIKATNN SSFGRGWFSP HMAAASRAIA ERIPLVDLVL EVRDARKMVL  60
LGYLGLGFWL SWLRNMVVLK LCQSFLGFPL PACKTKRTSC LIHELVLVMD EDVAIPTIWK  120
YHNSIVISVQ AIGELHILFQ ANHSNEQGGP CKSFPVEVHS FQMVYFVQFL TFLQARVREL  180
NNNDSSSYTA TILLLGIPNV GKSALANSLH RIGRISAADS NSFLQIGCQI EKGKLKHDTV  240
SPQPGETKDI SSLKIGSHPN IYVLDTPGVL PPQIHDVEVC TKLALTGTII IYTFCALGPM  300
GRVAVLKEYI CASQSELHPV ICGMAGTIVD YISGEKELAQ CFLAILNRSN EYKKWANLSN  360
SENGRTWIDH NIECSNSSKD IKEKRQYSAD HTQVPFSTDI RDFMVQNVRQ TLFKVISSFD  420
GNVEDEMLIE EEMKAVQGIF QTYLYIDLKR KVIDHLIKPT ETLQGCSCSL GLHARTSCIW  480
KVALNVNFSP GYYTFSATKK LGGFAISDGF GNDATFLANV SEFLHILNHQ VWTYTNPYIA  540
FSALRVRRNF YDLIITDLYL PDMDGFEVQK RVRQEFKLPL IIVSADDREH VILKALKLGA  600
AHYIVKPVCF DDVKNLWQFV VNVDDRSPKK HSFVEEIESG GEQSSEAISD QDTNGDHVKK  660
NSKRRRLTKE GNAPKKAKLI WTQELQARFL ESIHFIGLER AVPKTILEVM NVEGLTRENV  720
ASHLQKYRQF LRRVAAKISV SKSDIVNQSQ TSRSSIFGDS SASIFQQQPI SGQNMFMNLN  780
SSSLGYLLFQ SSDHEASTTS MPPFRNTQLY HPNSLSNFQR PQQAAFMGHP RSFQPAANYS  840
SVNNNVESNW SSTNGLQTQT SSLTNYLYGN YNNCGITAGF QYNNDFNNGN SWNGTMGFLN  900
DSSSLITNNN YGGFPVNSAA SVGLAGFINS NPNPNLMVEN HGRDSSTCGL DQNVLHQDMN  960
NASLPAGNLM LSNKNFSGLE DDASSVGFGG GFTTTTVEAA AASSSNVVDL SPSNQNQTGD  1020
YFDDLHDILF NDTNLEPVNH QDEGKEVFDS YETGASLQNS NREVIEEVEF DWLDLLDATA  1080
ILENVSPDEV CSCSCESYIW FIVSLALRPG LEVYGLNPQR LNHMKNQYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18673735264ARR10-B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1662666KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470575.10.0PREDICTED: two-component response regulator ARR1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF196722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-42response regulator 2