PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000117.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 248aa MW: 28429.2 Da PI: 8.2193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000117.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.1	7e-29	84	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw vtk FANhyb_rscf00000117.1.g00005.1 84 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTINPRAPTRVGCMAMLSIKKLNIGKWIVTK 161 9****************************************999.99************************** PP FAR1 81 leleHnHela 90 + +eHnH+l FANhyb_rscf00000117.1.g00005.1 162 FIKEHNHALI 171 *****995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	84	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MNFHIAVASV PDINVAHEVS NASTDAEFKR YNDSAVVGTS LQKILWVVQN DDRTQNSSQD 60 GSLVEVDEPY VGQEFDTEVD AQAFYNVYGL RMGFNTRMNY LSRSKHDGTI IARTFVCSKE 120 GYRKPDRRDK KTINPRAPTR VGCMAMLSIK KLNIGKWIVT KFIKEHNHAL IASKRPKGLV 180 EDQIPDDKTK IEELNRELFL ERERSTSLRK VIDLLFEHIE EHTQDLSKKV QYVVDKVKEI 240 ESEGKKPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302184.2	1e-173	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A315A5A0	1e-116	A0A315A5A0_PRUYE; Uncharacterized protein
TrEMBL	M5W2V7	1e-119	M5W2V7_PRUPE; Uncharacterized protein
STRING	XP_004302184.1	1e-179	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-61	FAR1 family protein