PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000117.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 223aa MW: 24811 Da PI: 6.3669

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000117.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.3	5.3e-28	122	209	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn+YA +vGF++r++ ++s+ +g+++ rt+vC+keg+r +k++ +k+ r+ra tr+gCka++ +kk ++g+w+v+k FANhyb_rscf00000117.1.g00006.1 122 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSVRPRAPTRVGCKAMISMKKLSNGNWVVAK 199 ****************************************9999.99************************** PP FAR1 81 leleHnHela 90 +++eH H+l FANhyb_rscf00000117.1.g00006.1 200 FVKEHAHSLI 209 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-25	122	210	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MQIKSIKLKY ADFLNLVFDH FVPQLRLKMN DINASLYEGL LILPLLLDSG IDTQTQNGAS 60 DRSADVELRL KNDDAILGTS VEEVSTIGQI EQVDHNSASV EVEADEPYVG QEFESEAAAH 120 AFYNAYALRV GFRTRVNDLS RSRVDGSVIA RTLVCNKEGY RVADKRDRKS VRPRAPTRVG 180 CKAMISMKKL SNGNWVVAKF VKEHAHSLIP GRSENGLNDE SSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466083.1	1e-125	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251P0W7	1e-89	A0A251P0W7_PRUPE; Uncharacterized protein
TrEMBL	M5VZA8	6e-89	M5VZA8_PRUPE; Uncharacterized protein
STRING	XP_008218478.1	1e-90	(Prunus mume)
STRING	EMJ06789	1e-89	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-43	FAR1 family protein