PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000120.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 433aa    MW: 48440 Da    PI: 6.6293
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000120.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073513842154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  FANhyb_rscf00000120.1.g00007.1 351 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 384
                                     469*****************************87 PP
2ELK28.82.8e-10305326122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELKh+L+++Y+++++++++E++
  FANhyb_rscf00000120.1.g00007.1 305 ELKHELKQGYKEKIVDIREEIL 326
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18140184IPR005540KNOX1
PfamPF037902.0E-16143183IPR005540KNOX1
SMARTSM012565.1E-29193248IPR005541KNOX2
PfamPF037911.8E-21197247IPR005541KNOX2
SMARTSM011886.1E-4305326IPR005539ELK domain
PROSITE profilePS512139.969305325IPR005539ELK domain
PfamPF037891.0E-6305326IPR005539ELK domain
PROSITE profilePS5007111.726325388IPR001356Homeobox domain
SuperFamilySSF466895.13E-16327391IPR009057Homeodomain-like
SMARTSM003894.7E-11327392IPR001356Homeobox domain
CDDcd000863.34E-12328389No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25332389IPR009057Homeodomain-like
PfamPF059201.2E-17345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAYHNHLSGD LPLHHFTDQA QQQQQQHNQS FMSDQPDPNS KSTEPHNPYQ TAPNWLNSAL  60
LRTQYATTTS GADTSNGGGG GTNFLNLHTA SDSTAASQAS NQWLSRPILQ RNHSDVIDDS  120
EGGVAVESGG GDGVMNWQNA RHKAEILAHP LYEPLLSAHV ACLRIATPVD QLPRIDAQLA  180
QSQNVVAKYS GMSHGMVGDD KELDHFMRHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE  240
QSLQSLTGVS PGEGTGATMS DDDEEQVDSD ANLFDGSMDG HDSMGFGPLI PTESERSLME  300
RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK  360
ARLVQETGLQ LKQINNWFIN QRKRNWHSNP STSTVLKSKR KRYAQVLHWA NACNIISVGI  420
QQLGTMLLKN RIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381401RKRNWHSNPSTSTVLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458839.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2P6PXM60.0A0A2P6PXM6_ROSCH; Homeobox protein knotted-1-like 3
STRINGXP_004290929.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3