PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000124.1.g00015.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 680aa    MW: 75475.1 Da    PI: 7.5687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000124.1.g00015.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-1685131148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g WT++Ede l +av+++ g++Wk+Ia+ +   R++ qc +rwqk+l
  FANhyb_rscf00000124.1.g00015.1  85 KGGWTPQEDETLRNAVEKYKGKNWKKIAQNFT-DRSEVQCLHRWQKVL 131
                                     688****************************9.************986 PP
2Myb_DNA-binding61.71.5e-19137183148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g+WT+eEd+++v++v+++G+  W++I++ ++ gR +kqc++rw+++l
  FANhyb_rscf00000124.1.g00015.1 137 KGPWTQEEDDKIVELVAKYGPTKWSLISKSLP-GRIGKQCRERWHNHL 183
                                     79******************************.*************97 PP
3Myb_DNA-binding50.25.8e-16189232146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     r +WT  E++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++
  FANhyb_rscf00000124.1.g00015.1 189 REAWTLVEELALMHAHRMHGNK-WAEIAKALP-GRTDNAIKNHWNS 232
                                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.68280131IPR017930Myb domain
SMARTSM007179.7E-1584133IPR001005SANT/Myb domain
PfamPF002493.9E-1585131IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-1586141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-1887136IPR009057Homeodomain-like
CDDcd001671.87E-1388131No hitNo description
PROSITE profilePS5129432.789132187IPR017930Myb domain
SuperFamilySSF466899.36E-31134230IPR009057Homeodomain-like
SMARTSM007172.7E-18136185IPR001005SANT/Myb domain
PfamPF002491.1E-18137183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-28137186IPR009057Homeodomain-like
CDDcd001672.91E-16139183No hitNo description
Gene3DG3DSA:1.10.10.603.1E-22187238IPR009057Homeodomain-like
SMARTSM007176.0E-15188236IPR001005SANT/Myb domain
PROSITE profilePS5129421.07188238IPR017930Myb domain
PfamPF002491.8E-14189232IPR001005SANT/Myb domain
CDDcd001674.17E-11191234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSFNLIPSTS SPPEKGRSEV PIEERCLVNK QSTAASSSDS ECSESPILKS PRDWEQPGRG  60
FSIFRTLENP YAGLMRITGP IRRAKGGWTP QEDETLRNAV EKYKGKNWKK IAQNFTDRSE  120
VQCLHRWQKV LNPELVKGPW TQEEDDKIVE LVAKYGPTKW SLISKSLPGR IGKQCRERWH  180
NHLNPDIKRE AWTLVEELAL MHAHRMHGNK WAEIAKALPG RTDNAIKNHW NSSLKKKLDF  240
YLATGQLPPP PKNSYLNVPK ETNRFTATKR LLVGSDKGSD STARTLPGNA DKRRKIDEDG  300
NDHLQSSEPL DMDMCAFYLA NGQLPPVPKN FSPNGAKDTN RTTATTRLLV DSDKGSESSA  360
HTLSGNADTR KVDDNGKDQL QSSGSEDMCG SSSILPDEHA DSEVMERRLR LSLMDPSCSN  420
SESLPTFSNC GVNSKPQIEN SDINSDPKYE NSEFNSQQVE DKVESSTVPV QTPSYGSLYY  480
EPPPVDSSIP FDSGISNLHY LQHEYESSPN LSPISFFTPP TAKSSGLGNR SPESILKIAA  540
KTFPNTPSIL RKRKSAQGHL PPNKLRIVDS ETVRETVTVP EEQERNKNSV ELSGSQDVSL  600
FDSPTSHGIS TTGPNGKAFN ASPPYRLRSR RTAVFKSVEK QLQFTCEEEY AGNSKPVELS  660
ANGSSAVTKD CSHATKMEIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-65842385159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-65842385159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466561.10.0PREDICTED: transcriptional activator Myb
TrEMBLA0A2P6RA220.0A0A2P6RA22_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004305203.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-114myb domain protein 3r-5