PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000129.1.g00023.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 377aa    MW: 41543.3 Da    PI: 7.4195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000129.1.g00023.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3451.3e-10583772374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++ L+e+A a+s+g+ e+a ++L+rl +  +p+ ++ qR+  +++ AL++r++       +  pp  ++   ++e++ +
  FANhyb_rscf00000129.1.g00023.1   8 KQSLMEAASAISEGKSEAAAEILTRLTQVTNPRPNSEQRMLEFMASALKSRVNP------ADNPPPGERCVFTQEHAGS 80 
                                     578**************************************************9......344444444455999999* PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgs 154
                                     ++ ++e+ P++++++++aN aIlea+  +    ++vH+iDfdi+qG+Q++ Ll+aL++R++g+p  ++iT+v++ + g 
  FANhyb_rscf00000129.1.g00023.1  81 TQSLYELLPCYRLGFMAANLAILEATLADqstiNKVHVIDFDIGQGGQYMHLLHALSTRQNGKPsVVKITTVAD-NGGG 158
                                     *************************8666568899*************************8888689*******.556* PP

                            GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                     +e+l++++e+L+++A++l+v +efnv v ++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+
  FANhyb_rscf00000129.1.g00023.1 159 EERLRTVRENLNQVAKQLRVGLEFNV-VGHKLSELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKG 236
                                     *************************9.799************************************************* PP

                            GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                                     l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea  ++++ +r+k E++ l+r++ n vaceg++r+er+e +
  FANhyb_rscf00000129.1.g00023.1 237 LAPRVVTLVEQELNTNTAPFMARMNECCAYYGALLESIEAV-AKDNPDRAKAEEA-LSRKLANSVACEGRDRVERCEVF 313
                                     **************************************998.89***********.*********************** PP

                            GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     +kWr+r+++aGF+  ++s++++++ k+ l+  +    g++v+e++g++++gW +r+L+++SaWr
  FANhyb_rscf00000129.1.g00023.1 314 GKWRARMGMAGFELRAMSQSVTESLKHRLSSGNrvHPGFTVKEQNGAVCFGWISRTLTVASAWR 377
                                     **************************99988776789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.2491355IPR005202Transcription factor GRAS
PfamPF035144.4E-1038377IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
PAMLTCSKQS LMEAASAISE GKSEAAAEIL TRLTQVTNPR PNSEQRMLEF MASALKSRVN  60
PADNPPPGER CVFTQEHAGS TQSLYELLPC YRLGFMAANL AILEATLADQ STINKVHVID  120
FDIGQGGQYM HLLHALSTRQ NGKPSVVKIT TVADNGGGEE RLRTVRENLN QVAKQLRVGL  180
EFNVVGHKLS ELNRESLGCE PDEPIAVNFA FKLYSMPDES VSTDNPRDEL LRRVKGLAPR  240
VVTLVEQELN TNTAPFMARM NECCAYYGAL LESIEAVAKD NPDRAKAEEA LSRKLANSVA  300
CEGRDRVERC EVFGKWRARM GMAGFELRAM SQSVTESLKH RLSSGNRVHP GFTVKEQNGA  360
VCFGWISRTL TVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4393776375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470326.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-156SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2P6SNC40.0A0A2P6SNC4_ROSCH; Putative transcription factor GRAS family
STRINGXP_004308059.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-158SCARECROW-like 8