PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000139.1.g00012.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YB

Protein Properties

Length: 155aa MW: 17599.6 Da PI: 5.7432

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000139.1.g00012.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	156.4	4.9e-49	6	100	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 +eqdr+lPianv+rimk+ lP++ak+sk+ak+ +qec++ef+sfvt+easdkc++e+rkt+ngdd++wa++ lGf++y+ FANhyb_rscf00000139.1.g00012.1 6 EEQDRLLPIANVGRIMKQGLPQRAKVSKEAKQRMQECATEFLSFVTAEASDKCHKENRKTVNGDDICWAMSALGFDNYA 84 69*************************************************************************** PP NF-YB 81 eplkvylkkyrelege 96 e+ + yl+kyre+e++ FANhyb_rscf00000139.1.g00012.1 85 EATTRYLNKYREAERH 100 ***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-46	5	107	IPR009072	Histone-fold
SuperFamily	SSF47113	4.66E-36	8	113	IPR009072	Histone-fold
Pfam	PF00808	2.1E-24	11	75	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.0E-17	39	57	No hit	No description
PRINTS	PR00615	1.0E-17	58	76	No hit	No description
PRINTS	PR00615	1.0E-17	77	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MVDHEEEQDR LLPIANVGRI MKQGLPQRAK VSKEAKQRMQ ECATEFLSFV TAEASDKCHK 60 ENRKTVNGDD ICWAMSALGF DNYAEATTRY LNKYREAERH RLAANQSNIN INTSSSSQFE 120 IREGDQLPIY LSGTQPPNLE FRILETGDNS FAKPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-41	7	96	3	92	Transcription factor HapC (Eurofung)
4g92_B	1e-41	7	96	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302413.1	1e-112	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O04027	2e-50	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A2P6R739	7e-99	A0A2P6R739_ROSCH; Putative transcription factor Hap3/NF-YB family
STRING	XP_004302413.1	1e-111	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	5e-52	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]