PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000142.1.g00013.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 298aa    MW: 32575.1 Da    PI: 8.4969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000142.1.g00013.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056232254223
                                     EETTTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                     +Cp Cg  Fs+  +L  H ++ H
  FANhyb_rscf00000142.1.g00013.1 232 ECPQCGAKFSSVTTLIDHVQKvH 254
                                     5******************9988 PP
2zf-C2H215.84e-05271292323
                                     ETTTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                                     Cp+C+k F+++  L+ H  + H
  FANhyb_rscf00000142.1.g00013.1 271 CPKCSKGFRDPVALVEHVEKeH 292
                                     *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183109.16E-9464No hitNo description
Gene3DG3DSA:4.10.1110.104.3E-71159IPR000058Zinc finger, AN1-type
PfamPF014284.3E-91355IPR000058Zinc finger, AN1-type
SMARTSM001540.0221358IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.0E-1197156IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.22E-899150No hitNo description
PfamPF014285.1E-8107147IPR000058Zinc finger, AN1-type
SMARTSM001540.034107148IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.473231254IPR007087Zinc finger, C2H2
SMARTSM003550.014231254IPR015880Zinc finger, C2H2-like
PfamPF138942.6E-4232254No hitNo description
PROSITE patternPS000280233254IPR007087Zinc finger, C2H2
SMARTSM003555.4269292IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912269297IPR007087Zinc finger, C2H2
PROSITE patternPS000280271292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVVECQQ IDFLPFTCDS CYKKADTLQV FCLEHRSYIK HNCPKGDRQN  60
VTVVICPLCA KGVHLIPDED ANITWERHVN TDCDPSNYEK ATKKKKCPVP GCRDVLTFSN  120
TIKCRDCMAD HCLKHRFGPD HKCPGPKKVE AGFPFMGVLN RSRTETPKRN HAPAKSSPNW  180
GSSFLSAASS FKASASAGVA KLTNELGQKW QTTKDGVGQS SSEGSRSGQV EECPQCGAKF  240
SSVTTLIDHV QKVHEKGGVR AGVKKLTVDA CPKCSKGFRD PVALVEHVEK EHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304391.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-126SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM5VQL81e-177M5VQL8_PRUPE; Uncharacterized protein
STRINGXP_004304391.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-121C2H2 family protein