PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000146.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 210aa MW: 23898.2 Da PI: 5.3134

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000146.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4.3e-15	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++++ +G+g W+++ + g++R++k+c++rw +yl FANhyb_rscf00000146.1.g00007.1 12 KGLWTAEEDRTLTEYINVHGKGKWNRVTKVTGLKRCGKSCRLRWMNYL 59 678*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.505	7	63	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	7	62	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-13	11	61	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	12	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.76E-21	14	86	IPR009057	Homeodomain-like
CDD	cd00167	4.16E-11	15	59	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-7	63	86	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEDGGRNHGY KKGLWTAEED RTLTEYINVH GKGKWNRVTK VTGLKRCGKS CRLRWMNYLS 60 PTVKRGDFSE EENDLIIRLH NLLGNRPVVS DSRTGSGKNR QPNQQASPKE KFNSAELQQQ 120 PLPDDSNGGG YGEAAAQGGH GCDDDHEQEM MMISRDSDVE FSGMWETMMM GSNNDYDHQG 180 SFWLYNNNED DLNLSNPNYF MDPSLDHHHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	12	86	7	80	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300899.1	1e-133	PREDICTED: trichome differentiation protein GL1-like
Refseq	XP_011464012.1	1e-133	PREDICTED: trichome differentiation protein GL1-like
TrEMBL	A0A2P6P5Y1	1e-104	A0A2P6P5Y1_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004300899.1	1e-132	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	2e-41	myb domain protein 66