PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000148.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 155aa    MW: 17785.4 Da    PI: 5.0825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000148.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-3295153159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++edp +v++tYeg+Hnh+
  FANhyb_rscf00000148.1.g00011.1  95 LDDGFKWRKYGKKMVKNSPNPRNYYKCSCEGCPVKKRVERDREDPAFVITTYEGTHNHR 153
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3481153IPR003657WRKY domain
SuperFamilySSF1182905.49E-2888153IPR003657WRKY domain
PROSITE profilePS5081130.17190155IPR003657WRKY domain
SMARTSM007741.8E-3595154IPR003657WRKY domain
PfamPF031062.4E-2596153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSNNNFNRSA QTPEDEFSSH PDFEEYLMFG DWLNEDHDYV ASGSTHNSVN QVNDDDSGGS  60
SSQLGGYTNE NGSVPERLEV KERVAFKMKS EIEILDDGFK WRKYGKKMVK NSPNPRNYYK  120
CSCEGCPVKK RVERDREDPA FVITTYEGTH NHRSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2585152774Probable WRKY transcription factor 4
2lex_A1e-2585152774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303487.11e-113PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A2P6Q1F94e-88A0A2P6Q1F9_ROSCH; Putative transcription factor WRKY family
STRINGXP_004303487.11e-113(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-45WRKY DNA-binding protein 50