PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000149.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 606aa    MW: 66841.8 Da    PI: 5.8478
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000149.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.11.7e-1382385971374
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     lv+ L++cAeav++++l+la+al++++s la +++ +m+++a++f+eALa+r++r    +y a p  ++     se l 
  FANhyb_rscf00000149.1.g00005.1 238 LVHGLMACAEAVQQNNLNLAKALVTQISYLAISQAGAMRKVATFFAEALAQRIFR----VYPAAPIDHS----YSEML- 307
                                     6899***************************************************....6655544444....34444. PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                                      +  f+e++P+lkf+h+taNqaIle ++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l
  FANhyb_rscf00000149.1.g00005.1 308 -QMHFYETCPYLKFAHFTANQAILEGFQGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPVFRLTGIGPPAADNSDHL 385
                                     .446*************************************************************************** PP

                            GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                     +e+g++La++Ae+++v+fe++ +va++l+dl+ ++L+++p   E++aVn+v++lh+ll++++++e+    vL++vk+++
  FANhyb_rscf00000149.1.g00005.1 386 QEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMK 460
                                     ****************************************88899*********************....********* PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     P++v+vveqea+hn++ Fl+rf e+l+yys+lfdsle ++   +++++++++++lg++i nvvaceg er+erhetl++
  FANhyb_rscf00000149.1.g00005.1 461 PEIVTVVEQEANHNGPVFLNRFNESLHYYSTLFDSLEGSV---NSQDKMMSEVYLGKQIFNVVACEGVERVERHETLAQ 536
                                     ***************************************7...899999999*************************** PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     Wr r++++GF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  FANhyb_rscf00000149.1.g00005.1 537 WRTRFDASGFTPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 597
                                     ************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.8E-3343110IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.1E-3243116No hitNo description
PROSITE profilePS5098566.38212576IPR005202Transcription factor GRAS
PfamPF035146.0E-136238597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MKREHHSHPH HHPIPNPSIA STSNAKAGKA AMWEESQHDD GMDELLAVLG YKVKSANMAD  60
VAQKIEQLEE FMGTVQQDGL SQLASDTVHY NPSDLSTWLE SMISEITPPP NFEPVMAPPP  120
PLGSSVMMND SFLAPAESST ITSLDFADQS MNTKSKSVSP RTQFEDCSSS NYELKAIPGK  180
AIFSQQTQFD SSPREPKRLK PSPDFYSTTS SSSLPLPSAV ESTRPVVVVD SQENGVRLVH  240
GLMACAEAVQ QNNLNLAKAL VTQISYLAIS QAGAMRKVAT FFAEALAQRI FRVYPAAPID  300
HSYSEMLQMH FYETCPYLKF AHFTANQAIL EGFQGKKRVH VIDFSMNQGM QWPALMQALA  360
LRPGGPPVFR LTGIGPPAAD NSDHLQEVGW KLAQLAETIH VEFEYRGFVA NSLADLDASM  420
LELRPSEVES VAVNSVFELH KLLARPGAIE KVLSVVKQMK PEIVTVVEQE ANHNGPVFLN  480
RFNESLHYYS TLFDSLEGSV NSQDKMMSEV YLGKQIFNVV ACEGVERVER HETLAQWRTR  540
FDASGFTPVH LGSNAFKQAS MLLALFAGGD GYRVEENDGC LMLGWHTRPL IATSAWKLGA  600
QAVMTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6423359614378Protein SCARECROW
5b3h_A1e-6423359613377Protein SCARECROW
5b3h_D1e-6423359613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298516.10.0PREDICTED: DELLA protein GAIP
SwissprotQ6EI060.0GAIP_CUCMA; DELLA protein GAIP
TrEMBLM9XGL20.0M9XGL2_ROSHC; GAI1
STRINGXP_004298516.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein