PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000149.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 984aa    MW: 109861 Da    PI: 6.461
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000149.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.83e-1366219811374
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     lv+ L++cAeav++++l+la+al++++s la +++ +m+++a++f+eALa+r++r    +y a p  ++     se l 
  FANhyb_rscf00000149.1.g00006.1 621 LVHGLMACAEAVQQNNLNLAKALVTQISYLAISQAGAMRKVATFFAEALAQRIFR----VYPAAPIDHS----YSEML- 690
                                     6899***************************************************....6655544444....34444. PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                                      +  f+e++P+lkf+h+taNqaIle ++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l
  FANhyb_rscf00000149.1.g00006.1 691 -QMHFYETCPYLKFAHFTANQAILEGFQGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPVFRLTGIGPPAADNSDHL 768
                                     .446*************************************************************************** PP

                            GRAS 159 eetgerLakfA.eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                     +e+g++La++A e+++v+fe++ +va++l+dl+ ++L+++p   E++aVn+v++lh+ll++++++e+    vL++vk++
  FANhyb_rscf00000149.1.g00006.1 769 QEVGWKLAQLAaETIHVEFEYRGFVANSLADLDASMLELRPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQM 843
                                     *********972679**************************88899*********************....******** PP

                            GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                                     +P++v+vveqea+hn++ Fl+rf e+l+yys+lfdsle ++   +++++++++++lg++i nvvaceg er+erhetl+
  FANhyb_rscf00000149.1.g00006.1 844 KPEIVTVVEQEANHNGPVFLNRFNESLHYYSTLFDSLEGSV---NSQDKMMSEVYLGKQIFNVVACEGVERVERHETLA 919
                                     ****************************************7...899999999************************** PP

                            GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     +Wr r++++GF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  FANhyb_rscf00000149.1.g00006.1 920 QWRTRFDASGFTPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 981
                                     *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138621.1E-5497296IPR025602BCP1 family
PfamPF120412.4E-29427492IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.5E-28427498No hitNo description
PROSITE profilePS5098566.113595960IPR005202Transcription factor GRAS
PfamPF035141.0E-133621981IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MPRRPTRHRA LVKSRALVKS RPLTFSKFSR QAARVASVFT IKRQMHTAEV LQKSPPNSAG  60
MIFFLITTFV TKSVKNNLKA KNEESESSEE EEFDGNVQVD FAFFDPKADD FHGVKTLLQT  120
YLDDKEWDLS GFVDLILEQT TVGSVVKIED DEDNGIFGLV TALNLGRYKA SNLYICVPDQ  180
KCMTEIKEFL LKVSQKDVID DLSSLLGKEA HSVGLLVSQR VTNLPPQLLP PLYEGLFNEV  240
SWATEDEPTE ELKNSFRFKF YIIVTKFYKQ KTADQKRKQN VNEEAIIYVK PEDEIFHKLS  300
SWSFEFSLNT LQIPPHEATK KLSANGVSHG CQSRQDLCIP TTTAIFNRGT LNLTERLSTL  360
SGLFASIIHH IFGFRAIYNR RNPQTMKREH HRHPHHPNPN PSMASTSNDK AGKAAMWEES  420
QHDDGMDELL AVLGYKVKSS SMADVAQKLV QLEELTLQQD GLSQLASDTV HYNPSDLSTW  480
LESMISEITP PPNFEPVMAP PPPLGSSVMM NDSFLAPAES STITSLDFAD QSMNTKSKSV  540
SPRTQFEDCS SSSNYELKAI PGKAIFSQQT QFGSSPREPK RLKPSPDFYS TTSSSSPPLP  600
SAVESTRPVV VVDSQENGVR LVHGLMACAE AVQQNNLNLA KALVTQISYL AISQAGAMRK  660
VATFFAEALA QRIFRVYPAA PIDHSYSEML QMHFYETCPY LKFAHFTANQ AILEGFQGKK  720
RVHVIDFSMN QGMQWPALMQ ALALRPGGPP VFRLTGIGPP AADNSDHLQE VGWKLAQLAA  780
ETIHVEFEYR GFVANSLADL DASMLELRPS EVESVAVNSV FELHKLLARP GAIEKVLSVV  840
KQMKPEIVTV VEQEANHNGP VFLNRFNESL HYYSTLFDSL EGSVNSQDKM MSEVYLGKQI  900
FNVVACEGVE RVERHETLAQ WRTRFDASGF TPVHLGSNAF KQASMLLALF AGGDGYRVEE  960
NDGCLMLGWH TRPLIATSAW KLGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6161698014378Protein SCARECROW
5b3h_A9e-6161698013377Protein SCARECROW
5b3h_D9e-6161698013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298516.10.0PREDICTED: DELLA protein GAIP
SwissprotQ6EI060.0GAIP_CUCMA; DELLA protein GAIP
TrEMBLM9XGL20.0M9XGL2_ROSHC; GAI1
STRINGXP_004298516.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein