PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000171.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 458aa    MW: 50732.1 Da    PI: 7.1802
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000171.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.7e-23280366186
                        trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                                     rW + e +aLi +  ++e+++r+  ++  ++lWee++  m + gf r+ k+Ckekwen+nk++kk  ++++kr++++ +
  FANhyb_rscf00000171.1.g00006.1 280 RWIQAEAQALIGLWASVEHKFRTpsNSGPGALWEEIALGMNSMGFDRTGKKCKEKWENMNKYFKKAITNDRKRSAND-K 357
                                     8*********************854668899*****************************************96555.6 PP

                        trihelix  78 tcpyfdqle 86 
                                     tc+yf++le
  FANhyb_rscf00000171.1.g00006.1 358 TCQYFNELE 366
                                     *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.725273339IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-4278339IPR009057Homeodomain-like
CDDcd122031.01E-20279345No hitNo description
PfamPF138372.1E-18279366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEVLTGDRNM PDPAAAEGEE FPAHITPLFT EPHQQLVFDN PTAAAMSPQK LRIRCNGRSA  60
LPDDADLALL DKGLSPRNDV DEAHGGEFVN WKRKRKRTSS CASSRRKSRR LEKLEHFLES  120
LVNKMLEKQE QMHMKLIEMV QDKEKERIAK EEAWKQQELE RITRDEEVRA QETSRSLAII  180
NFVQNLLGSD VQLPQPAPIV AQPVAAVPSS SHHDHQCVEE NDKLHKDCHV QVPQPAPLVA  240
QSVATVPPTS NHDHQCAEQN DNLHKDTATV KCSATATDKR WIQAEAQALI GLWASVEHKF  300
RTPSNSGPGA LWEEIALGMN SMGFDRTGKK CKEKWENMNK YFKKAITNDR KRSANDKTCQ  360
YFNELELLYK SGLLNLGNVG FSPPSNLENG GFSPTSNLGN GGFSPTSNMG NGGFSPTSNM  420
GNGGFSPTSN RGMAALVLQT TRRVETSPNS ACPVTLVF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293402.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLA0A2P6Q2071e-162A0A2P6Q207_ROSCH; Putative transcription factor MYB family
STRINGXP_004293402.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-40Trihelix family protein