PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000181.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 432aa    MW: 47299.1 Da    PI: 9.2832
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000181.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.4e-19204237134
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  FANhyb_rscf00000181.1.g00011.1 204 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 237
                                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.756198234IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-19198250IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13198238No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15202237IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.47E-12203231No hitNo description
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
PfamPF003206.5E-17204237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAPPFLQLST IGSHDHDLDQ YDHHHHDLFN YLEPQSSFSS TTSSLSSPIF LSPAQVQGPI  60
SDHYYREPQD FQFQLLEADH IVSYGGSCDH DQTLGNEGEK GTVINLSIDP KHGAGDDHRD  120
HENRSTRAEN ISVKWMSSKM RIMRKMTNPD QTISSHNNTA AATIDGTTAR VNFSASHNFE  180
AQKLHPLSPL ATDSSNSTNP IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM  240
AAAAVAANGT TLAVEAAPSM IKTSKVKLKD NKTIPFKKRC HKLAISPSPR GKSKTKLRFE  300
DFSVSSMNQN SGTDPPPPPT TTTTTTTTTT TTFQRVFPQD EKEAAILLMA LSCGLKRCHK  360
LAISPSPRGK SKTKLRFEDF SVSSMNQNSG TDPPPPTTTT TTTTTTFQRV FPQDEKEAAI  420
LLMALSCGLV RG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287558.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A2P6RK760.0A0A2P6RK76_ROSCH; Putative transcription factor C2C2-GATA family
STRINGXP_004287558.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-23GATA family protein