PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000198.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YA

Protein Properties

Length: 199aa MW: 21932.3 Da PI: 7.7249

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000198.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.5	4e-32	107	163	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k k+rkpylheSRh hAlrR+Rg+gGrF FANhyb_rscf00000198.1.g00004.1 107 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKNRKPYLHESRHLHALRRARGCGGRF 163 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.0E-36	105	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.942	106	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.7E-27	108	163	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	109	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	111	131	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	140	163	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MPSLDSCEPD DQQKHSESQM ISSSPAPGMS HPGIPGPMQY VTPPQIGAGH AVAPGAYPYP 60 DPYYRSIFAP YDTQAYPPQP YGGQPTVHLQ LMGIQQAGVP LPTDAVEEPV FVNAKQYHGI 120 LRRRQSRAKA ESENKALKNR KPYLHESRHL HALRRARGCG GRFLNAKKDE NEQSGGENSQ 180 TIINLNSDEN ERSSSDRTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	106	171	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293988.1	1e-143	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_011460650.1	1e-143	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	5e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2P6Q631	1e-126	A0A2P6Q631_ROSCH; Putative transcription factor Hap2/NF-YA family
STRING	XP_004293988.1	1e-142	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-51	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]