PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000209.1.g00016.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 1232aa    MW: 138844 Da    PI: 6.7475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000209.1.g00016.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.33.1e-1810671125359
                                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                                      Dg++W KY q+++ gs++pr YY C  +   gC++ k+v++s+ d++++ itY+g+H+++
  FANhyb_rscf00000209.1.g00016.1 1067 DGFRWTKYDQRDILGSRYPREYYVCNPEeygGCMAVKEVQKSN-DQRFLRITYTGRHTCT 1125
                                      9************************9887889**********9.**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522008.37E-354156IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010424.15910153IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002551.3E-3711153IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.5E-3813199IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101403.7E-1913127IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.48E-54192450IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.3E-34209458IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.7E-7224342IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003646.1E-23227242No hitNo description
CDDcd000090.00198230342No hitNo description
PRINTSPR003646.1E-23299313No hitNo description
PRINTSPR003646.1E-23390404No hitNo description
SuperFamilySSF520581.7E-47496511IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.7E-47558829IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.3E-40590938IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003646.1E-23709725No hitNo description
SuperFamilySSF520581.7E-47857968IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.803.4E-49801043IPR003657WRKY domain
SuperFamilySSF1182902.35E-69891043IPR003657WRKY domain
SMARTSM007748.5E-59911044IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-1710621127IPR003657WRKY domain
SuperFamilySSF1182902.62E-1510641127IPR003657WRKY domain
SMARTSM007741.4E-1610651126IPR003657WRKY domain
PROSITE profilePS5081116.90310671127IPR003657WRKY domain
PfamPF031066.3E-1710671124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1232 aa     Download sequence    Send to blast
MDEPSSSSSL PTDVFLNFRG EDTRNIFVCH LHRALVRETL QVYIDKHGLQ KGDDLENLLE  60
GIAGSKLSIL VFSENYATST WCLKELVQIL KCKKDQNQIV MPVFYKVDPS DIRKQRGSFG  120
EAFAKHESDC KGDKELLQQV QSWRSALEEA ANLSGFDSNS KDYAPAFGTV LVILARDDAG  180
LIDAIVKKVF DKVNSIPPHT DDGFVAMDSH LNEMRRKINA VPDGVVYVGI CGMGGIGKTT  240
IAHAVFREIA HQFDHCCFLE DVRERFTKGV VQLQREFLEG MFKKKEHNVD AVYMKMMRRL  300
ANKKILVVLD DVLDSRQMDT LLGGSNRSFG AGSIIIVTTR DEHVMRGFEI YKPASLSVRD  360
SLKLFSQNAF STDKPSGKYE HLSRCIVQYA QGLPLALILL GKLLRKRSVS EWEGQLNKLR  420
KQPHPGITEV LQISFDGLQD EYQKNIFLDI ACFFKGMDKD YVTIVLENCG FYPRADLNVL  480
VERALLTISD SNKLEMHDLL HEMGRHIESS TEDGKRRRFW SEHVERVLTD ENSAATEAEG  540
LMITLPDKED RFFKATAFEH MTKLRLLMFM YREWYYGADG KHDLIGDFNF LSSELRVFIW  600
HKYPLQCLPS SFDPKNLVHL DMHSGRIEHL WEGSKRANNL RIINLIGCPL KETPDLTEVP  660
NLESLVMGGG IVGGRPSFTE VHPSILGHEN LVLLSLAGCH ELKTLPRSIL MKSLKTLDLS  720
HCVNLEMFPE ISEDMDALSV LSLYQTAIKE LPSSIERLRG LQSLDMTFCR KLIRLPDSIC  780
NLAKLRSLKL KDCSKLSKLP ENIGNMDSLL ELEVDLGGLE QLPVSILRLK LGGRLSFHGC  840
KMAAPFSSWP LSIEDRCTDV VHLDFSGCNM MKLSDAIACF PSLKVLKLSR NNLERLPAAM  900
KELGCLERLE LDGCKRLRSI PELSSTISYI NAQNCTALET VSAPQSPYEI GRCFIFSNCC  960
NLVHEDVFKD IVGTHFPPQV KVTSGLMQGY LDDGFNWSIG SSGIERCKYR CAHGLGCWAK  1020
AIVPTPIDLT IRNITYVGRH TCWKTQPMLT HQVRMTLGME TIGGPFDGFR WTKYDQRDIL  1080
GSRYPREYYV CNPEEYGGCM AVKEVQKSND QRFLRITYTG RHTCTLPSTG IGGRTDSSTS  1140
FASSASSGSS EEIAELLRSL GPDLKGIVDF LNNPDNQIAL LDKFSRARGA NDVENNNNNV  1200
AGCLCWFWSL WNFMTSKKNT PEIHEDPHEE GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A3e-3951561146TIR-NB-LRR type resistance protein RPV1
5ku7_B3e-3951561146TIR-NB-LRR type resistance protein RPV1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304776.10.0PREDICTED: TMV resistance protein N-like
TrEMBLA0A2P6SMR50.0A0A2P6SMR5_ROSCH; Putative transcription factor WRKY family
STRINGXP_004304776.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2620723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.12e-80WRKY family protein