PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000215.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7297.53 Da PI: 10.3862

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000215.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.4	8.1e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng++KKA+ELSvLCdaeva+iifs +gklye++s FANhyb_rscf00000215.1.g00002.1 9 KRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSGRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.674	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-30	2	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.85E-38	2	60	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLFK KAYELSVLCD AEVALIIFSG RGKLYEFCSS 60 LSDA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-20	1	63	1	63	MEF2C
5f28_B	2e-20	1	63	1	63	MEF2C
5f28_C	2e-20	1	63	1	63	MEF2C
5f28_D	2e-20	1	63	1	63	MEF2C
6bz1_A	2e-20	1	63	1	63	MEF2 CHIMERA
6bz1_B	2e-20	1	63	1	63	MEF2 CHIMERA
6bz1_C	2e-20	1	63	1	63	MEF2 CHIMERA
6bz1_D	2e-20	1	63	1	63	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021809942.1	8e-36	MADS-box protein CMB1-like
Swissprot	O04067	2e-34	AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBL	A0A251PBI0	2e-34	A0A251PBI0_PRUPE; Uncharacterized protein
TrEMBL	A0A251PEW6	1e-34	A0A251PEW6_PRUPE; Uncharacterized protein
TrEMBL	A0A2P6P359	3e-34	A0A2P6P359_ROSCH; Putative transcription factor MADS-MIKC family
TrEMBL	A0A314XRJ6	3e-34	A0A314XRJ6_PRUYE; SEPALLATA1-like protein
STRING	XP_004299281.1	7e-35	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-37	MIKC_MADS family protein

Publications ? help Back to Top
Bonhomme F,Sommer H,Bernier G,Jacqmard A Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis. Plant Mol. Biol., 1997. 34(4): p. 573-82 [PMID:9247539]