PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000217.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 616aa    MW: 69234.3 Da    PI: 7.1899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000217.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61.1e-22514571259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     +Dg++WrKYGqK +k+    rsY++C  ++C++kk+ e s+++p+ + ++Yeg Hnh+
  FANhyb_rscf00000217.1.g00006.1 514 EDGFEWRKYGQKFIKNIGKFRSYFKCQNSNCRAKKRAEWSSSEPDKLRVVYEGVHNHT 571
                                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.203.2E-2739145No hitNo description
SuperFamilySSF561127.06E-7753354IPR011009Protein kinase-like domain
PROSITE profilePS5001136.47176358IPR000719Protein kinase domain
PfamPF077142.4E-4478354IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS00107082111IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.104.5E-44146367No hitNo description
PROSITE patternPS001080203215IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5081119.818508573IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-23508571IPR003657WRKY domain
SuperFamilySSF1182903.4E-21510571IPR003657WRKY domain
SMARTSM007741.1E-23513572IPR003657WRKY domain
PfamPF031062.9E-20514570IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MGNCWCSWWG EPSVHRVSSN AKSESPKDQS PSLNPREDDR NLPSNPEEVE ILRRDSAANP  60
LIAFTFNELK IITANFRQDR LLGGGGFGSV YKGFITEDLR EGLSHLPVAV KVHDGDNSYQ  120
GHREWLAEVI FLGQLSHPNL VKLIGYCCED KQRVLIYEYM ARGSVENNLF SRVLLPLPWS  180
IRMKIAFGAA KGLAFLHDAE KPVIYRDFKT SNILLDLDYN AKLSDFGLAK DGPVGDKSHV  240
STRIMGTYGY AAPEYILTGH LTPRSDVYSF GVVLLELLTG RKSLDKSRPA REQNLTDWAL  300
PMLKEKKKLL NIIDPRLEGE YPIKGVHKAA MLVYHCLNRN PKARPLMRDI VDSLEPLQVS  360
DEVSAEKTIT EIIQFPDGEI RRKEELLYQV ASGHVQVSLA ENMIPSRIAA GAEVIYQKEH  420
RVILALLLRS ISALLSLKLT YKLHSEEGRV VFTVFLDRIA ATSSRRTKVV NHVCLLVDSL  480
KTDHHDEDEG DGEGEEEVQD NTNSGGSNKV VIPEDGFEWR KYGQKFIKNI GKFRSYFKCQ  540
NSNCRAKKRA EWSSSEPDKL RVVYEGVHNH TDNNASSAGS STSHSSSSLN PSADANQYDL  600
YTQVFGNQSS HWDKKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_A1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j5t_D1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j5t_I1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j5t_J1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j5t_M1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j5u_C1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j5v_C1e-1224238856400Probable serine/threonine-protein kinase PBL2
6j6i_A1e-1224238856400Probable serine/threonine-protein kinase PBL2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant defense signaling. {ECO:0000250|UniProtKB:O48814}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294946.10.0PREDICTED: probable receptor-like protein kinase At5g56460
SwissprotQ9FM850.0PBL16_ARATH; Probable serine/threonine-protein kinase PBL16
TrEMBLA0A2P6QNP50.0A0A2P6QNP5_ROSCH; Uncharacterized protein
STRINGXP_004294946.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF811222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-14WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  2. Pierre M, et al.
    N-myristoylation regulates the SnRK1 pathway in Arabidopsis.
    Plant Cell, 2007. 19(9): p. 2804-21
    [PMID:17827350]
  3. Zhang J, et al.
    Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.
    Cell Host Microbe, 2010. 7(4): p. 290-301
    [PMID:20413097]