PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000223.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 856aa MW: 94169.9 Da PI: 5.5477

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000223.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.2e-29	559	610	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ FANhyb_rscf00000223.1.g00002.1 559 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 610 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	544	630	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-26	562	610	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-21	750	838	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.4E-22	755	835	No hit	No description
PROSITE profile	PS51745	20.817	756	838	IPR000270	PB1 domain
SMART	SM00666	7.9E-21	756	838	IPR000270	PB1 domain
CDD	cd06407	3.18E-32	757	837	No hit	No description
Pfam	PF00564	1.9E-16	759	837	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MEYQFSTRQG KDQGCSSSGG AAVEDLVGLD GEARNVISED MFNNIAELMN FDTYAGWCSS 60 PGTMEQIGVS YPSVSYAPLD ALSFAQQNGG ALPVAEDGGA SFDCGDKIGF QQMDTTQFGA 120 STDFNHAHDA AAKLKNGFVQ QNNIMDTADY VISRPHEWSL NEKMLRALSL FKESSGGGIL 180 AQDVYILCRE KQGSILGLPG RVFVSKVPEW TSNVSYYNKA EYLRVEHAAD HQVRGSIALP 240 VFDMNSEMSC CAVLELVSTK DKLNFDAEME IVCNALQAVK LRTTTPPRIL PHCLSRNQRA 300 ALTEITDVLR AVCHAHTLPL ALTWIPCCYS DGDGEGIRRV RVREGITNSN EKCILCVEET 360 ACYVNDRTMQ GFVHACAEHH LEEGNGIAGK ALQSNHPFFI HDVKVYDIYD YPLVHHARRY 420 GLNAAVAIRL RSTYTGDDDY ILEFFLPVNM KGSSEQQLLL NNLSGTMQRI CKSLRTVSDA 480 ELTGVEGSDS GFQREAIPNT PLIPRRNSQS PSSDSEMKSA ENIPSNVFNR KDGGVEVDFP 540 PEHAPNGSRR QAEKKRSTAE KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS 600 RWPSRKINKV NRSLKKIQTV LDSVQGVEGG LKYDPTTGGR LTMTPCLTIV PEPDFGVSYL 660 VKEVNRWGQS NDSLTLESSG CHFVPQSSSS FVVADEMDIG VDRDGGNVNY NQPTSSSMTD 720 SSNSSGSMMH GCSSSSQSFE ERKYQVKETN VEIGSKIIVK ATYKEDTIRF KFVPSGGCLK 780 LYEEVAKRLK LQDGTFQLKY LDDEQEWVML VSDADLRECL EILDDIGTHS VKFMVRDIPF 840 GVSSSGSSNC FLAGGS

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MEYQFSTRQG KDQGCSSSGG AAVEDLVGLD GEARNVISED MFNNIAELMN FDTYAGWCSS  60
PGTMEQIGVS YPSVSYAPLD ALSFAQQNGG ALPVAEDGGA SFDCGDKIGF QQMDTTQFGA  120
STDFNHAHDA AAKLKNGFVQ QNNIMDTADY VISRPHEWSL NEKMLRALSL FKESSGGGIL  180
AQDVYILCRE KQGSILGLPG RVFVSKVPEW TSNVSYYNKA EYLRVEHAAD HQVRGSIALP  240
VFDMNSEMSC CAVLELVSTK DKLNFDAEME IVCNALQAVK LRTTTPPRIL PHCLSRNQRA  300
ALTEITDVLR AVCHAHTLPL ALTWIPCCYS DGDGEGIRRV RVREGITNSN EKCILCVEET  360
ACYVNDRTMQ GFVHACAEHH LEEGNGIAGK ALQSNHPFFI HDVKVYDIYD YPLVHHARRY  420
GLNAAVAIRL RSTYTGDDDY ILEFFLPVNM KGSSEQQLLL NNLSGTMQRI CKSLRTVSDA  480
ELTGVEGSDS GFQREAIPNT PLIPRRNSQS PSSDSEMKSA ENIPSNVFNR KDGGVEVDFP  540
PEHAPNGSRR QAEKKRSTAE KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS  600
RWPSRKINKV NRSLKKIQTV LDSVQGVEGG LKYDPTTGGR LTMTPCLTIV PEPDFGVSYL  660
VKEVNRWGQS NDSLTLESSG CHFVPQSSSS FVVADEMDIG VDRDGGNVNY NQPTSSSMTD  720
SSNSSGSMMH GCSSSSQSFE ERKYQVKETN VEIGSKIIVK ATYKEDTIRF KFVPSGGCLK  780
LYEEVAKRLK LQDGTFQLKY LDDEQEWVML VSDADLRECL EILDDIGTHS VKFMVRDIPF  840
GVSSSGSSNC FLAGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011464935.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_011464936.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A251R0A4	0.0	A0A251R0A4_PRUPE; Uncharacterized protein
STRING	XP_004289276.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]