PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000233.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 796aa    MW: 86650.8 Da    PI: 4.9068
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000233.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-154177135
                            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  FANhyb_rscf00000233.1.g00002.1 41 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 77
                                    *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-93588IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.5243583IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-113686No hitNo description
Gene3DG3DSA:3.30.50.103.6E-143982IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.70E-154087No hitNo description
PROSITE patternPS0034404168IPR000679Zinc finger, GATA-type
PfamPF003201.9E-134177IPR000679Zinc finger, GATA-type
PfamPF000121.3E-132193465IPR013126Heat shock protein 70 family
CDDcd102330194534No hitNo description
SuperFamilySSF530671.46E-60194365No hitNo description
Gene3DG3DSA:3.30.420.403.4E-59194231No hitNo description
PRINTSPR003012.1E-71210222IPR013126Heat shock protein 70 family
Gene3DG3DSA:3.30.30.301.7E-37232292No hitNo description
PRINTSPR003012.1E-71232240IPR013126Heat shock protein 70 family
Gene3DG3DSA:3.30.420.403.4E-59301381No hitNo description
PRINTSPR003012.1E-71320340IPR013126Heat shock protein 70 family
SuperFamilySSF530677.41E-56372535No hitNo description
PROSITE patternPS003290377390IPR018181Heat shock protein 70, conserved site
Gene3DG3DSA:3.30.420.408.6E-39382410No hitNo description
Gene3DG3DSA:3.90.640.102.2E-27411470No hitNo description
PfamPF000125.4E-108470765IPR013126Heat shock protein 70 family
Gene3DG3DSA:3.30.420.408.6E-39471512No hitNo description
PRINTSPR003012.1E-71484500IPR013126Heat shock protein 70 family
PROSITE patternPS010360487501IPR018181Heat shock protein 70, conserved site
PRINTSPR003012.1E-71516536IPR013126Heat shock protein 70 family
SuperFamilySSF1009206.54E-64539696IPR029047Heat shock protein 70kD, peptide-binding domain
PRINTSPR003012.1E-71543562IPR013126Heat shock protein 70 family
Gene3DG3DSA:2.60.34.108.9E-68545671IPR029047Heat shock protein 70kD, peptide-binding domain
PRINTSPR003012.1E-71624640IPR013126Heat shock protein 70 family
Gene3DG3DSA:1.20.1270.104.9E-41672777IPR029048Heat shock protein 70kD, C-terminal domain
SuperFamilySSF1009344.97E-30690771IPR029048Heat shock protein 70kD, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MHRKNGQFAS LKENSGGSGW DLSQSTLQDG TPRPETVLRR CQHCGVSENN TPAMRRGPAG  60
PRTLCNACGL MWANKGTLRD LSKGGRSLSI DHIEPATPLE MKPSIVECQF SANQDGHGAP  120
EDPSKSVIEG SNDASVNLDV DNFHESPEDL TNTLPMGIVS SSNDDEQMIV MGLKLSMQHA  180
TYFSLDRPSC ALNCVGVWQH DRVEIIANDQ GNRTTPSYVA FTDTERLIGD AAKNQVAMNP  240
VNTVFDAKRL IGRRFSDSSV QGDMKLWPFK VVAGPGDKPM IVVSYKGEEK QFAAEEISSM  300
VLVKMREIAE AYLGATVKNA VVTVPAYFND SQRQATKDAG VIAGLNVLRI INEPTAAAIA  360
YGLDKKATSV GEKNVLIFDL GGGTFDVSLL TIEEGIFEVK ATAGDTHLGG EDFDNRMVNH  420
FVQEFKRKNK KDISGNPRAL RRLRTACERA KRTLSSTAQT TIEIDSLFEV EKCLRDAKMD  480
KSSVHDVVLV GGSTRIPKVQ QLLQDFFNGK ELCKSINPDE AVAYGAAVQA AILSGEGNEK  540
VQDLLLLDVT PLSLGLETAG GVMTVLIPRN TTIPTKKEQV FSTYSDNQPG VLIQVFEGER  600
ARTRDNNLLG KFELSGIPPA PRGVPQITVC FDIDANGILN VSAEDKTTGQ KNKITITNDK  660
GRLSKEEIEK MVQEAEKYKS EDEEVKKKVE SKNALENYAY NMRNTIKDEK IASKLDAGDK  720
KKIEDAIEQA IQWLDGNQLA EAEEYDDKVK ELEGICNPII AKMYQGGAAP DMGGGMDDDV  780
PPAGGSGAGP KIEEVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fpn_A0.019376518616HEAT SHOCK-RELATED 70 KDA PROTEIN 2
5fpn_B0.019376518616HEAT SHOCK-RELATED 70 KDA PROTEIN 2
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cadmium.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287404.10.0PREDICTED: heat shock cognate 70 kDa protein 2-like
SwissprotP091890.0HSP7C_PETHY; Heat shock cognate 70 kDa protein
TrEMBLA0A2P6PGL70.0A0A2P6PGL7_ROSCH; Putative Heat shock protein 70 family
STRINGXP_004287404.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-26ZIM-like 1